Strain Fitness in Pseudomonas simiae WCS417 around PS417_12740

Experiment: Fraxetin 3 mM; liquid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_12730 and PS417_12735 are separated by 158 nucleotidesPS417_12735 and PS417_12740 are separated by 232 nucleotidesPS417_12740 and PS417_12745 overlap by 4 nucleotides PS417_12730: PS417_12730 - glycosyltransferase, at 2,775,776 to 2,777,065 _12730 PS417_12735: PS417_12735 - peroxidase, at 2,777,224 to 2,777,724 _12735 PS417_12740: PS417_12740 - secretion protein HlyD, at 2,777,957 to 2,779,258 _12740 PS417_12745: PS417_12745 - multidrug transporter, at 2,779,255 to 2,782,356 _12745 Position (kb) 2777 2778 2779 2780Strain fitness (log2 ratio) -2 -1 0 1 2at 2776.987 kb on + strandat 2777.151 kb on + strandat 2777.210 kb on + strandat 2777.211 kb on - strandat 2777.362 kb on - strand, within PS417_12735at 2777.691 kb on + strandat 2777.695 kb on + strandat 2777.722 kb on + strandat 2777.722 kb on + strandat 2777.723 kb on - strandat 2777.755 kb on + strandat 2777.851 kb on + strandat 2777.852 kb on - strandat 2777.866 kb on - strandat 2777.876 kb on + strandat 2777.877 kb on - strandat 2777.880 kb on + strandat 2778.200 kb on + strand, within PS417_12740at 2778.341 kb on + strand, within PS417_12740at 2778.438 kb on - strand, within PS417_12740at 2778.452 kb on - strand, within PS417_12740at 2778.452 kb on - strand, within PS417_12740at 2779.640 kb on - strand, within PS417_12745at 2779.997 kb on - strand, within PS417_12745

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; liquid stress
remove
2,776,987 + +0.2
2,777,151 + -0.6
2,777,210 + -0.2
2,777,211 - -0.4
2,777,362 - PS417_12735 0.28 -0.5
2,777,691 + +0.2
2,777,695 + -0.6
2,777,722 + -0.1
2,777,722 + -0.5
2,777,723 - +0.3
2,777,755 + +0.4
2,777,851 + -1.2
2,777,852 - -0.2
2,777,866 - -0.1
2,777,876 + +0.3
2,777,877 - +2.2
2,777,880 + +0.0
2,778,200 + PS417_12740 0.19 -0.9
2,778,341 + PS417_12740 0.29 -1.2
2,778,438 - PS417_12740 0.37 -2.2
2,778,452 - PS417_12740 0.38 -1.3
2,778,452 - PS417_12740 0.38 -1.7
2,779,640 - PS417_12745 0.12 +0.1
2,779,997 - PS417_12745 0.24 -0.4

Or see this region's nucleotide sequence