Strain Fitness in Pseudomonas simiae WCS417 around PS417_11125

Experiment: Fraxetin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11120 and PS417_11125 are separated by 180 nucleotidesPS417_11125 and PS417_11130 are separated by 256 nucleotides PS417_11120: PS417_11120 - UDP pyrophosphate phosphatase, at 2,383,577 to 2,384,446 _11120 PS417_11125: PS417_11125 - hypothetical protein, at 2,384,627 to 2,385,133 _11125 PS417_11130: PS417_11130 - peptide ABC transporter substrate-binding protein, at 2,385,390 to 2,386,946 _11130 Position (kb) 2384 2385 2386Strain fitness (log2 ratio) -2 -1 0 1at 2384.166 kb on + strand, within PS417_11120at 2384.167 kb on - strand, within PS417_11120at 2384.181 kb on - strand, within PS417_11120at 2384.312 kb on + strand, within PS417_11120at 2384.316 kb on - strand, within PS417_11120at 2384.449 kb on + strandat 2384.449 kb on + strandat 2384.450 kb on - strandat 2384.526 kb on + strandat 2384.549 kb on - strandat 2384.700 kb on - strand, within PS417_11125at 2384.708 kb on + strand, within PS417_11125at 2384.834 kb on + strand, within PS417_11125at 2384.834 kb on + strand, within PS417_11125at 2384.835 kb on - strand, within PS417_11125at 2385.000 kb on - strand, within PS417_11125at 2385.000 kb on - strand, within PS417_11125at 2385.326 kb on + strandat 2385.327 kb on - strandat 2385.327 kb on - strandat 2385.327 kb on - strandat 2385.640 kb on - strand, within PS417_11130at 2385.640 kb on - strand, within PS417_11130at 2385.987 kb on + strand, within PS417_11130at 2385.987 kb on + strand, within PS417_11130at 2385.988 kb on - strand, within PS417_11130at 2385.992 kb on - strand, within PS417_11130at 2386.014 kb on + strand, within PS417_11130

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; liquid stress
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2,384,166 + PS417_11120 0.68 +0.4
2,384,167 - PS417_11120 0.68 +0.3
2,384,181 - PS417_11120 0.69 +1.3
2,384,312 + PS417_11120 0.84 -0.6
2,384,316 - PS417_11120 0.85 +0.2
2,384,449 + -0.1
2,384,449 + -0.1
2,384,450 - -1.9
2,384,526 + +0.2
2,384,549 - +0.9
2,384,700 - PS417_11125 0.14 -1.5
2,384,708 + PS417_11125 0.16 -0.6
2,384,834 + PS417_11125 0.41 -0.1
2,384,834 + PS417_11125 0.41 -0.4
2,384,835 - PS417_11125 0.41 -1.3
2,385,000 - PS417_11125 0.74 +0.2
2,385,000 - PS417_11125 0.74 -0.1
2,385,326 + +0.0
2,385,327 - +0.2
2,385,327 - -0.1
2,385,327 - -0.2
2,385,640 - PS417_11130 0.16 +0.7
2,385,640 - PS417_11130 0.16 +1.5
2,385,987 + PS417_11130 0.38 -0.2
2,385,987 + PS417_11130 0.38 +0.3
2,385,988 - PS417_11130 0.38 -1.1
2,385,992 - PS417_11130 0.39 -0.6
2,386,014 + PS417_11130 0.40 +0.5

Or see this region's nucleotide sequence