Experiment: Fraxetin 3 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10645 and PS417_10650 are separated by 16 nucleotides PS417_10650 and PS417_10655 are separated by 298 nucleotides PS417_10655 and PS417_10660 are separated by 1 nucleotides
PS417_10645: PS417_10645 - magnesium ABC transporter ATPase, at 2,270,826 to 2,273,531
_10645
PS417_10650: PS417_10650 - methyltransferase, at 2,273,548 to 2,274,264
_10650
PS417_10655: PS417_10655 - LuxR family transcriptional regulator, at 2,274,563 to 2,275,189
_10655
PS417_10660: PS417_10660 - histidine kinase, at 2,275,191 to 2,278,805
_10660
Position (kb)
2273
2274
2275 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2272.926 kb on + strand, within PS417_10645 at 2273.043 kb on + strand, within PS417_10645 at 2273.043 kb on + strand, within PS417_10645 at 2273.199 kb on + strand, within PS417_10645 at 2273.199 kb on + strand, within PS417_10645 at 2273.200 kb on - strand at 2273.200 kb on - strand, within PS417_10645 at 2273.410 kb on - strand at 2273.439 kb on + strand at 2273.446 kb on + strand at 2273.472 kb on + strand at 2273.472 kb on + strand at 2273.473 kb on - strand at 2273.505 kb on + strand at 2273.505 kb on + strand at 2273.505 kb on + strand at 2273.505 kb on + strand at 2273.505 kb on + strand at 2273.505 kb on + strand at 2273.505 kb on + strand at 2273.506 kb on - strand at 2273.513 kb on + strand at 2273.530 kb on - strand at 2273.547 kb on + strand at 2273.547 kb on + strand at 2273.548 kb on - strand at 2273.548 kb on - strand at 2273.767 kb on + strand, within PS417_10650 at 2274.308 kb on - strand at 2274.341 kb on + strand at 2274.357 kb on - strand at 2274.417 kb on + strand at 2274.417 kb on + strand at 2274.431 kb on + strand at 2274.450 kb on + strand at 2274.450 kb on + strand at 2274.451 kb on - strand at 2274.451 kb on - strand at 2274.451 kb on - strand at 2274.454 kb on - strand at 2274.459 kb on + strand at 2274.460 kb on - strand at 2274.460 kb on - strand at 2274.513 kb on + strand at 2274.513 kb on + strand at 2274.517 kb on + strand at 2274.518 kb on - strand at 2274.518 kb on - strand at 2274.518 kb on - strand at 2274.518 kb on - strand at 2274.531 kb on + strand at 2274.535 kb on + strand at 2274.535 kb on + strand at 2274.535 kb on + strand at 2274.535 kb on + strand at 2274.535 kb on + strand at 2274.535 kb on + strand at 2274.536 kb on - strand at 2274.541 kb on + strand at 2274.541 kb on + strand at 2274.562 kb on + strand at 2274.576 kb on + strand at 2274.576 kb on + strand at 2274.599 kb on - strand at 2274.617 kb on + strand at 2274.618 kb on - strand at 2275.057 kb on + strand, within PS417_10655 at 2275.075 kb on + strand, within PS417_10655 at 2275.106 kb on + strand, within PS417_10655 at 2275.107 kb on - strand, within PS417_10655
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; liquid stress remove 2,272,926 + PS417_10645 0.78 -3.0 2,273,043 + PS417_10645 0.82 -1.5 2,273,043 + PS417_10645 0.82 -1.9 2,273,199 + PS417_10645 0.88 -2.8 2,273,199 + PS417_10645 0.88 -1.5 2,273,200 - -0.7 2,273,200 - PS417_10645 0.88 -3.9 2,273,410 - -3.4 2,273,439 + +0.1 2,273,446 + -0.1 2,273,472 + -1.4 2,273,472 + +0.2 2,273,473 - -2.2 2,273,505 + -2.4 2,273,505 + +0.2 2,273,505 + -1.3 2,273,505 + -1.1 2,273,505 + -2.0 2,273,505 + -0.5 2,273,505 + -0.7 2,273,506 - -4.9 2,273,513 + -1.6 2,273,530 - -3.1 2,273,547 + -3.6 2,273,547 + -3.3 2,273,548 - -4.0 2,273,548 - -4.0 2,273,767 + PS417_10650 0.31 -3.2 2,274,308 - -0.5 2,274,341 + +0.6 2,274,357 - -0.9 2,274,417 + -0.8 2,274,417 + -1.3 2,274,431 + -0.9 2,274,450 + +0.2 2,274,450 + -0.4 2,274,451 - -0.1 2,274,451 - +0.1 2,274,451 - +0.9 2,274,454 - -0.3 2,274,459 + -0.0 2,274,460 - +0.2 2,274,460 - -0.8 2,274,513 + -0.1 2,274,513 + -0.6 2,274,517 + +0.4 2,274,518 - -0.3 2,274,518 - -1.4 2,274,518 - -0.1 2,274,518 - -0.5 2,274,531 + -0.5 2,274,535 + +0.6 2,274,535 + -0.3 2,274,535 + -0.1 2,274,535 + +0.3 2,274,535 + +0.8 2,274,535 + -0.6 2,274,536 - +0.7 2,274,541 + +0.4 2,274,541 + -0.1 2,274,562 + -1.5 2,274,576 + -0.1 2,274,576 + -0.2 2,274,599 - -0.1 2,274,617 + +0.1 2,274,618 - +0.0 2,275,057 + PS417_10655 0.79 +0.5 2,275,075 + PS417_10655 0.82 +0.3 2,275,106 + PS417_10655 0.87 -0.4 2,275,107 - PS417_10655 0.87 +0.2
Or see this region's nucleotide sequence