Strain Fitness in Pseudomonas simiae WCS417 around PS417_02675

Experiment: Scopoletin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02665 and PS417_02670 overlap by 4 nucleotidesPS417_02670 and PS417_02675 overlap by 4 nucleotidesPS417_02675 and PS417_02680 are separated by 786 nucleotides PS417_02665: PS417_02665 - branched-chain amino acid ABC transporter permease, at 610,189 to 611,466 _02665 PS417_02670: PS417_02670 - ABC transporter, at 611,463 to 612,338 _02670 PS417_02675: PS417_02675 - ABC transporter ATP-binding protein, at 612,335 to 613,051 _02675 PS417_02680: PS417_02680 - hypothetical protein, at 613,838 to 614,605 _02680 Position (kb) 612 613 614Strain fitness (log2 ratio) -2 -1 0 1 2at 611.449 kb on - strandat 611.449 kb on - strandat 611.628 kb on + strand, within PS417_02670at 611.628 kb on + strand, within PS417_02670at 611.758 kb on - strand, within PS417_02670at 611.961 kb on + strand, within PS417_02670at 611.962 kb on - strand, within PS417_02670at 612.307 kb on - strandat 612.307 kb on - strandat 612.335 kb on - strandat 612.335 kb on - strandat 612.347 kb on - strandat 612.374 kb on + strandat 612.377 kb on + strandat 612.561 kb on - strand, within PS417_02675at 612.561 kb on - strand, within PS417_02675at 612.561 kb on - strand, within PS417_02675at 612.561 kb on - strand, within PS417_02675at 612.727 kb on + strand, within PS417_02675at 613.049 kb on + strandat 613.050 kb on - strandat 613.117 kb on - strandat 613.237 kb on + strandat 613.237 kb on + strandat 613.237 kb on + strandat 613.238 kb on - strandat 613.238 kb on - strandat 613.238 kb on - strandat 613.238 kb on - strandat 613.239 kb on + strandat 613.240 kb on - strandat 613.430 kb on + strandat 613.430 kb on + strandat 613.430 kb on + strandat 613.430 kb on + strandat 613.431 kb on - strandat 613.431 kb on - strandat 613.431 kb on - strandat 613.432 kb on + strandat 613.432 kb on + strandat 613.433 kb on - strandat 613.443 kb on + strandat 613.443 kb on + strandat 613.444 kb on - strandat 613.444 kb on - strandat 613.477 kb on - strandat 613.556 kb on + strandat 613.556 kb on + strandat 613.556 kb on + strandat 613.560 kb on + strandat 613.560 kb on + strandat 613.560 kb on + strandat 613.560 kb on + strandat 613.561 kb on - strandat 613.561 kb on - strandat 613.619 kb on - strandat 613.638 kb on + strandat 613.638 kb on + strandat 613.639 kb on - strandat 613.686 kb on + strandat 613.855 kb on + strandat 613.856 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress
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611,449 - -0.2
611,449 - +0.3
611,628 + PS417_02670 0.19 +0.4
611,628 + PS417_02670 0.19 +0.5
611,758 - PS417_02670 0.34 +0.8
611,961 + PS417_02670 0.57 -0.2
611,962 - PS417_02670 0.57 +0.1
612,307 - -0.5
612,307 - +0.6
612,335 - -0.3
612,335 - +2.5
612,347 - -0.3
612,374 + +0.7
612,377 + +0.4
612,561 - PS417_02675 0.32 -0.6
612,561 - PS417_02675 0.32 -0.5
612,561 - PS417_02675 0.32 -1.0
612,561 - PS417_02675 0.32 -0.7
612,727 + PS417_02675 0.55 -1.0
613,049 + -0.7
613,050 - -0.1
613,117 - +0.7
613,237 + +0.5
613,237 + -0.2
613,237 + -0.4
613,238 - +0.3
613,238 - +0.5
613,238 - +1.4
613,238 - +0.3
613,239 + +0.3
613,240 - -0.1
613,430 + -0.4
613,430 + -0.0
613,430 + -0.5
613,430 + +1.0
613,431 - +0.1
613,431 - -0.2
613,431 - +0.0
613,432 + -0.1
613,432 + +0.6
613,433 - -0.3
613,443 + +1.1
613,443 + +0.1
613,444 - -0.8
613,444 - +0.2
613,477 - -0.6
613,556 + +0.8
613,556 + +2.1
613,556 + +0.7
613,560 + -0.4
613,560 + +0.3
613,560 + +0.2
613,560 + +0.2
613,561 - +0.4
613,561 - +0.0
613,619 - -0.3
613,638 + +0.2
613,638 + -0.2
613,639 - -2.5
613,686 + +0.4
613,855 + -0.0
613,856 - +0.5

Or see this region's nucleotide sequence