Strain Fitness in Pseudomonas simiae WCS417 around PS417_08990

Experiment: Scopoletin 3 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_08985 and PS417_08990 overlap by 4 nucleotides PS417_08985: PS417_08985 - histidine kinase, at 1,955,938 to 1,957,839 _08985 PS417_08990: PS417_08990 - ABC transporter substrate-binding protein, at 1,957,836 to 1,958,765 _08990 Position (kb) 1957 1958 1959Strain fitness (log2 ratio) -2 -1 0 1at 1956.883 kb on - strand, within PS417_08985at 1957.152 kb on + strand, within PS417_08985at 1957.152 kb on + strand, within PS417_08985at 1957.152 kb on + strand, within PS417_08985at 1957.208 kb on + strand, within PS417_08985at 1957.300 kb on - strand, within PS417_08985at 1957.404 kb on - strand, within PS417_08985at 1957.544 kb on + strand, within PS417_08985at 1957.544 kb on + strand, within PS417_08985at 1957.544 kb on + strand, within PS417_08985at 1957.545 kb on - strand, within PS417_08985at 1958.029 kb on + strand, within PS417_08990at 1958.029 kb on + strand, within PS417_08990at 1958.137 kb on + strand, within PS417_08990at 1958.137 kb on + strand, within PS417_08990at 1958.166 kb on + strand, within PS417_08990at 1958.210 kb on + strand, within PS417_08990at 1958.251 kb on - strand, within PS417_08990at 1958.390 kb on + strand, within PS417_08990at 1958.579 kb on + strand, within PS417_08990at 1958.792 kb on + strandat 1958.813 kb on + strandat 1958.813 kb on + strandat 1958.813 kb on + strandat 1958.814 kb on - strandat 1958.814 kb on - strandat 1958.814 kb on - strandat 1958.814 kb on - strandat 1958.963 kb on + strandat 1958.963 kb on + strandat 1958.966 kb on + strandat 1958.967 kb on - strandat 1958.967 kb on - strandat 1959.077 kb on + strandat 1959.077 kb on + strandat 1959.078 kb on - strandat 1959.083 kb on + strandat 1959.083 kb on + strandat 1959.083 kb on + strandat 1959.084 kb on - strandat 1959.084 kb on - strandat 1959.084 kb on - strandat 1959.177 kb on - strandat 1959.180 kb on + strandat 1959.224 kb on + strandat 1959.225 kb on - strandat 1959.275 kb on + strandat 1959.276 kb on - strandat 1959.446 kb on + strandat 1959.482 kb on + strandat 1959.536 kb on + strandat 1959.536 kb on + strandat 1959.536 kb on + strandat 1959.728 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 3 mM; liquid stress
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1,956,883 - PS417_08985 0.50 -0.3
1,957,152 + PS417_08985 0.64 +0.2
1,957,152 + PS417_08985 0.64 -1.1
1,957,152 + PS417_08985 0.64 +0.1
1,957,208 + PS417_08985 0.67 -0.2
1,957,300 - PS417_08985 0.72 -0.7
1,957,404 - PS417_08985 0.77 +0.2
1,957,544 + PS417_08985 0.84 +0.0
1,957,544 + PS417_08985 0.84 -0.5
1,957,544 + PS417_08985 0.84 -0.2
1,957,545 - PS417_08985 0.84 +0.1
1,958,029 + PS417_08990 0.21 -0.9
1,958,029 + PS417_08990 0.21 -0.2
1,958,137 + PS417_08990 0.32 -1.5
1,958,137 + PS417_08990 0.32 -1.0
1,958,166 + PS417_08990 0.35 -1.8
1,958,210 + PS417_08990 0.40 -1.3
1,958,251 - PS417_08990 0.45 -0.5
1,958,390 + PS417_08990 0.60 -0.6
1,958,579 + PS417_08990 0.80 -0.4
1,958,792 + -0.3
1,958,813 + +1.5
1,958,813 + -0.4
1,958,813 + -0.4
1,958,814 - +0.2
1,958,814 - +0.4
1,958,814 - +1.1
1,958,814 - +0.9
1,958,963 + -0.1
1,958,963 + +0.3
1,958,966 + -0.3
1,958,967 - +0.0
1,958,967 - -0.3
1,959,077 + +0.1
1,959,077 + -0.1
1,959,078 - -1.6
1,959,083 + -0.2
1,959,083 + -0.1
1,959,083 + +0.3
1,959,084 - -0.1
1,959,084 - -0.3
1,959,084 - -1.7
1,959,177 - +0.9
1,959,180 + +0.1
1,959,224 + -0.5
1,959,225 - -0.2
1,959,275 + +0.5
1,959,276 - +0.2
1,959,446 + +0.2
1,959,482 + +1.0
1,959,536 + +0.5
1,959,536 + -0.1
1,959,536 + -0.1
1,959,728 + +0.9

Or see this region's nucleotide sequence