Strain Fitness in Pseudomonas simiae WCS417 around PS417_27875

Experiment: 80% Methanol 2 mM; liquid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27870 and PS417_27875 are separated by 127 nucleotidesPS417_27875 and PS417_27880 are separated by 117 nucleotidesPS417_27880 and PS417_27885 are separated by 124 nucleotides PS417_27870: PS417_27870 - ATP-dependent DNA helicase RecG, at 6,006,868 to 6,008,943 _27870 PS417_27875: PS417_27875 - histidine kinase, at 6,009,071 to 6,010,471 _27875 PS417_27880: PS417_27880 - helicase, at 6,010,589 to 6,010,963 _27880 PS417_27885: PS417_27885 - hypothetical protein, at 6,011,088 to 6,012,008 _27885 Position (kb) 6009 6010 6011Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 6008.119 kb on - strand, within PS417_27870at 6008.321 kb on - strand, within PS417_27870at 6008.383 kb on + strand, within PS417_27870at 6008.384 kb on - strand, within PS417_27870at 6008.526 kb on - strand, within PS417_27870at 6008.831 kb on + strandat 6008.957 kb on - strandat 6008.978 kb on + strandat 6009.007 kb on + strandat 6009.038 kb on + strandat 6009.038 kb on + strandat 6009.039 kb on - strandat 6009.039 kb on - strandat 6009.039 kb on - strandat 6009.039 kb on - strandat 6009.052 kb on + strandat 6009.207 kb on + strandat 6009.208 kb on - strandat 6009.401 kb on + strand, within PS417_27875at 6009.791 kb on + strand, within PS417_27875at 6009.791 kb on + strand, within PS417_27875at 6010.025 kb on + strand, within PS417_27875at 6010.025 kb on + strand, within PS417_27875at 6010.026 kb on - strand, within PS417_27875at 6010.221 kb on + strand, within PS417_27875at 6010.256 kb on + strand, within PS417_27875at 6010.256 kb on + strand, within PS417_27875at 6010.256 kb on + strandat 6010.257 kb on - strand, within PS417_27875at 6010.257 kb on - strand, within PS417_27875at 6010.257 kb on - strand, within PS417_27875at 6010.257 kb on - strand, within PS417_27875at 6010.412 kb on - strandat 6010.581 kb on + strandat 6010.582 kb on - strandat 6010.586 kb on + strandat 6010.587 kb on - strandat 6010.587 kb on - strandat 6010.590 kb on + strandat 6010.590 kb on + strandat 6010.591 kb on - strandat 6010.614 kb on + strandat 6010.984 kb on + strandat 6011.074 kb on + strandat 6011.074 kb on + strandat 6011.341 kb on - strand, within PS417_27885at 6011.383 kb on + strand, within PS417_27885at 6011.395 kb on + strandat 6011.395 kb on + strand, within PS417_27885at 6011.395 kb on + strand, within PS417_27885

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Per-strain Table

Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; liquid stress
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6,008,119 - PS417_27870 0.60 +0.1
6,008,321 - PS417_27870 0.70 +1.4
6,008,383 + PS417_27870 0.73 -1.0
6,008,384 - PS417_27870 0.73 +0.2
6,008,526 - PS417_27870 0.80 +0.4
6,008,831 + -0.1
6,008,957 - +0.5
6,008,978 + -0.2
6,009,007 + -0.6
6,009,038 + +0.1
6,009,038 + -2.3
6,009,039 - +2.1
6,009,039 - +2.4
6,009,039 - +3.4
6,009,039 - +2.7
6,009,052 + +0.1
6,009,207 + +3.1
6,009,208 - +3.3
6,009,401 + PS417_27875 0.24 +3.2
6,009,791 + PS417_27875 0.51 +3.4
6,009,791 + PS417_27875 0.51 +2.8
6,010,025 + PS417_27875 0.68 +3.0
6,010,025 + PS417_27875 0.68 +3.1
6,010,026 - PS417_27875 0.68 +3.4
6,010,221 + PS417_27875 0.82 +3.2
6,010,256 + PS417_27875 0.85 +3.2
6,010,256 + PS417_27875 0.85 +3.2
6,010,256 + +4.2
6,010,257 - PS417_27875 0.85 +3.1
6,010,257 - PS417_27875 0.85 +3.7
6,010,257 - PS417_27875 0.85 +3.6
6,010,257 - PS417_27875 0.85 +3.1
6,010,412 - +2.6
6,010,581 + +0.0
6,010,582 - +0.6
6,010,586 + -0.1
6,010,587 - +0.1
6,010,587 - +0.6
6,010,590 + -0.2
6,010,590 + -0.1
6,010,591 - +0.1
6,010,614 + +1.1
6,010,984 + -0.6
6,011,074 + +0.4
6,011,074 + -0.6
6,011,341 - PS417_27885 0.27 +1.2
6,011,383 + PS417_27885 0.32 +0.4
6,011,395 + +1.0
6,011,395 + PS417_27885 0.33 -0.2
6,011,395 + PS417_27885 0.33 +1.0

Or see this region's nucleotide sequence