Experiment: 80% Methanol 2 mM; liquid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15245 and PS417_15250 are separated by 333 nucleotides PS417_15250 and PS417_15255 are separated by 4 nucleotides PS417_15255 and PS417_15260 overlap by 4 nucleotides PS417_15260 and PS417_15265 overlap by 4 nucleotides
PS417_15245: PS417_15245 - PTS sugar transporter subunit IIC, at 3,342,887 to 3,344,962
_15245
PS417_15250: PS417_15250 - DNA repair protein, at 3,345,296 to 3,345,625
_15250
PS417_15255: PS417_15255 - serine/threonine protein kinase, at 3,345,630 to 3,346,475
_15255
PS417_15260: PS417_15260 - protein phosphatase, at 3,346,472 to 3,347,185
_15260
PS417_15265: PS417_15265 - type VI secretion protein VasK, at 3,347,182 to 3,350,517
_15265
Position (kb)
3345
3346
3347 Strain fitness (log2 ratio)
-1
0
1
2 at 3344.648 kb on + strand, within PS417_15245 at 3344.649 kb on - strand, within PS417_15245 at 3344.649 kb on - strand, within PS417_15245 at 3345.182 kb on + strand at 3345.201 kb on + strand at 3345.289 kb on + strand at 3345.564 kb on + strand, within PS417_15250 at 3345.596 kb on + strand at 3345.646 kb on - strand at 3345.646 kb on - strand at 3345.646 kb on - strand at 3345.844 kb on + strand, within PS417_15255 at 3345.845 kb on - strand, within PS417_15255 at 3345.845 kb on - strand, within PS417_15255 at 3346.178 kb on + strand, within PS417_15255 at 3346.609 kb on - strand, within PS417_15260 at 3346.664 kb on + strand, within PS417_15260 at 3346.664 kb on + strand, within PS417_15260 at 3346.665 kb on - strand, within PS417_15260 at 3346.665 kb on - strand, within PS417_15260 at 3346.803 kb on + strand, within PS417_15260 at 3346.804 kb on - strand, within PS417_15260 at 3346.895 kb on - strand, within PS417_15260 at 3346.931 kb on + strand, within PS417_15260 at 3346.931 kb on + strand, within PS417_15260 at 3346.932 kb on - strand, within PS417_15260 at 3347.065 kb on + strand, within PS417_15260 at 3347.066 kb on - strand, within PS417_15260 at 3347.262 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 80% Methanol 2 mM; liquid stress remove 3,344,648 + PS417_15245 0.85 +0.3 3,344,649 - PS417_15245 0.85 -0.6 3,344,649 - PS417_15245 0.85 +0.1 3,345,182 + -0.4 3,345,201 + +0.9 3,345,289 + +0.3 3,345,564 + PS417_15250 0.81 -0.1 3,345,596 + +0.3 3,345,646 - +2.7 3,345,646 - +2.7 3,345,646 - +2.2 3,345,844 + PS417_15255 0.25 +0.2 3,345,845 - PS417_15255 0.25 +2.0 3,345,845 - PS417_15255 0.25 +1.7 3,346,178 + PS417_15255 0.65 +0.8 3,346,609 - PS417_15260 0.19 +1.4 3,346,664 + PS417_15260 0.27 -0.7 3,346,664 + PS417_15260 0.27 +0.4 3,346,665 - PS417_15260 0.27 +1.7 3,346,665 - PS417_15260 0.27 +0.0 3,346,803 + PS417_15260 0.46 -0.6 3,346,804 - PS417_15260 0.46 +0.5 3,346,895 - PS417_15260 0.59 +0.9 3,346,931 + PS417_15260 0.64 +0.1 3,346,931 + PS417_15260 0.64 -1.5 3,346,932 - PS417_15260 0.64 +0.5 3,347,065 + PS417_15260 0.83 -0.1 3,347,066 - PS417_15260 0.83 +0.6 3,347,262 - +0.3
Or see this region's nucleotide sequence