Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04865 and PS417_04870 overlap by 4 nucleotides PS417_04870 and PS417_04875 are separated by 2 nucleotides PS417_04875 and PS417_04880 are separated by 247 nucleotides PS417_04880 and PS417_04885 are separated by 53 nucleotides
PS417_04865: PS417_04865 - molybdenum cofactor biosynthesis protein MoaC, at 1,081,882 to 1,082,355
_04865
PS417_04870: PS417_04870 - molybdenum cofactor biosynthesis protein MoaD, at 1,082,352 to 1,082,594
_04870
PS417_04875: PS417_04875 - molybdenum cofactor biosynthesis protein MoaE, at 1,082,597 to 1,083,046
_04875
PS417_04880: PS417_04880 - hypothetical protein, at 1,083,294 to 1,084,265
_04880
PS417_04885: PS417_04885 - type IV secretion protein Rhs, at 1,084,319 to 1,089,088
_04885
Position (kb)
1083
1084
1085 Strain fitness (log2 ratio)
-2
-1
0
1 at 1082.365 kb on + strand at 1082.366 kb on - strand at 1082.366 kb on - strand at 1082.699 kb on + strand, within PS417_04875 at 1082.699 kb on + strand, within PS417_04875 at 1083.071 kb on + strand at 1083.227 kb on - strand at 1083.315 kb on - strand at 1083.562 kb on + strand, within PS417_04880 at 1083.655 kb on - strand, within PS417_04880 at 1083.655 kb on - strand at 1083.655 kb on - strand, within PS417_04880 at 1083.792 kb on - strand, within PS417_04880 at 1083.792 kb on - strand, within PS417_04880 at 1083.824 kb on + strand, within PS417_04880 at 1083.828 kb on + strand, within PS417_04880 at 1083.828 kb on + strand, within PS417_04880 at 1083.829 kb on - strand, within PS417_04880 at 1083.829 kb on - strand, within PS417_04880 at 1083.874 kb on + strand, within PS417_04880 at 1083.874 kb on + strand at 1083.879 kb on - strand, within PS417_04880 at 1083.879 kb on - strand, within PS417_04880 at 1083.883 kb on - strand, within PS417_04880 at 1083.883 kb on - strand, within PS417_04880 at 1083.984 kb on + strand, within PS417_04880 at 1083.985 kb on - strand, within PS417_04880 at 1083.996 kb on - strand, within PS417_04880 at 1084.031 kb on - strand, within PS417_04880 at 1084.263 kb on + strand at 1084.318 kb on + strand at 1084.392 kb on - strand at 1084.495 kb on + strand at 1084.496 kb on - strand at 1084.496 kb on - strand at 1084.685 kb on + strand at 1084.685 kb on + strand at 1084.686 kb on - strand at 1084.710 kb on + strand at 1084.711 kb on - strand at 1084.737 kb on - strand at 1084.853 kb on + strand, within PS417_04885 at 1084.853 kb on + strand, within PS417_04885 at 1084.854 kb on - strand, within PS417_04885 at 1084.854 kb on - strand, within PS417_04885 at 1084.866 kb on + strand, within PS417_04885 at 1084.866 kb on + strand, within PS417_04885 at 1084.936 kb on + strand, within PS417_04885 at 1084.947 kb on + strand, within PS417_04885 at 1084.947 kb on + strand, within PS417_04885 at 1084.947 kb on + strand, within PS417_04885 at 1084.948 kb on - strand, within PS417_04885 at 1084.967 kb on + strand, within PS417_04885 at 1084.968 kb on - strand, within PS417_04885 at 1084.975 kb on + strand, within PS417_04885 at 1084.975 kb on + strand, within PS417_04885 at 1084.975 kb on + strand, within PS417_04885 at 1084.976 kb on - strand, within PS417_04885 at 1085.002 kb on + strand, within PS417_04885 at 1085.003 kb on - strand, within PS417_04885 at 1085.003 kb on - strand, within PS417_04885 at 1085.003 kb on - strand, within PS417_04885 at 1085.090 kb on + strand, within PS417_04885 at 1085.112 kb on - strand, within PS417_04885 at 1085.126 kb on + strand, within PS417_04885 at 1085.127 kb on - strand, within PS417_04885 at 1085.127 kb on - strand, within PS417_04885 at 1085.188 kb on + strand, within PS417_04885 at 1085.188 kb on + strand, within PS417_04885 at 1085.189 kb on - strand, within PS417_04885 at 1085.192 kb on + strand, within PS417_04885 at 1085.193 kb on - strand, within PS417_04885 at 1085.193 kb on - strand, within PS417_04885 at 1085.193 kb on - strand, within PS417_04885 at 1085.198 kb on + strand, within PS417_04885 at 1085.198 kb on + strand, within PS417_04885 at 1085.198 kb on + strand, within PS417_04885
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 1,082,365 + -0.3 1,082,366 - +0.5 1,082,366 - -1.0 1,082,699 + PS417_04875 0.23 -2.6 1,082,699 + PS417_04875 0.23 -0.9 1,083,071 + -0.1 1,083,227 - -2.2 1,083,315 - +0.1 1,083,562 + PS417_04880 0.28 -2.2 1,083,655 - PS417_04880 0.37 +0.5 1,083,655 - +0.9 1,083,655 - PS417_04880 0.37 +1.4 1,083,792 - PS417_04880 0.51 +0.6 1,083,792 - PS417_04880 0.51 +0.2 1,083,824 + PS417_04880 0.55 -0.3 1,083,828 + PS417_04880 0.55 +1.1 1,083,828 + PS417_04880 0.55 +0.6 1,083,829 - PS417_04880 0.55 +0.8 1,083,829 - PS417_04880 0.55 +0.0 1,083,874 + PS417_04880 0.60 -1.3 1,083,874 + +0.5 1,083,879 - PS417_04880 0.60 +0.5 1,083,879 - PS417_04880 0.60 -0.1 1,083,883 - PS417_04880 0.61 +1.1 1,083,883 - PS417_04880 0.61 -0.1 1,083,984 + PS417_04880 0.71 -0.4 1,083,985 - PS417_04880 0.71 +0.2 1,083,996 - PS417_04880 0.72 +0.6 1,084,031 - PS417_04880 0.76 +0.2 1,084,263 + -0.4 1,084,318 + -0.7 1,084,392 - +0.3 1,084,495 + -1.8 1,084,496 - -0.0 1,084,496 - +0.4 1,084,685 + -0.9 1,084,685 + +0.2 1,084,686 - +0.1 1,084,710 + -0.0 1,084,711 - -0.2 1,084,737 - +0.6 1,084,853 + PS417_04885 0.11 -0.7 1,084,853 + PS417_04885 0.11 -0.3 1,084,854 - PS417_04885 0.11 -0.4 1,084,854 - PS417_04885 0.11 +0.4 1,084,866 + PS417_04885 0.11 +0.0 1,084,866 + PS417_04885 0.11 +0.2 1,084,936 + PS417_04885 0.13 -0.3 1,084,947 + PS417_04885 0.13 -0.0 1,084,947 + PS417_04885 0.13 -0.2 1,084,947 + PS417_04885 0.13 -1.3 1,084,948 - PS417_04885 0.13 +0.3 1,084,967 + PS417_04885 0.14 +0.5 1,084,968 - PS417_04885 0.14 +1.5 1,084,975 + PS417_04885 0.14 +0.1 1,084,975 + PS417_04885 0.14 -0.5 1,084,975 + PS417_04885 0.14 -1.9 1,084,976 - PS417_04885 0.14 +0.1 1,085,002 + PS417_04885 0.14 +0.2 1,085,003 - PS417_04885 0.14 +0.9 1,085,003 - PS417_04885 0.14 +0.6 1,085,003 - PS417_04885 0.14 -1.1 1,085,090 + PS417_04885 0.16 -0.6 1,085,112 - PS417_04885 0.17 -0.0 1,085,126 + PS417_04885 0.17 -0.4 1,085,127 - PS417_04885 0.17 -0.0 1,085,127 - PS417_04885 0.17 +0.3 1,085,188 + PS417_04885 0.18 -0.5 1,085,188 + PS417_04885 0.18 +1.2 1,085,189 - PS417_04885 0.18 +0.8 1,085,192 + PS417_04885 0.18 -0.8 1,085,193 - PS417_04885 0.18 -0.7 1,085,193 - PS417_04885 0.18 -0.9 1,085,193 - PS417_04885 0.18 +0.2 1,085,198 + PS417_04885 0.18 -0.5 1,085,198 + PS417_04885 0.18 -0.1 1,085,198 + PS417_04885 0.18 +0.2
Or see this region's nucleotide sequence