Strain Fitness in Pseudomonas simiae WCS417 around PS417_04460

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04450 and PS417_04455 are separated by 191 nucleotidesPS417_04455 and PS417_04460 are separated by 69 nucleotidesPS417_04460 and PS417_04470 are separated by 718 nucleotides PS417_04450: PS417_04450 - hypothetical protein, at 987,665 to 988,150 _04450 PS417_04455: PS417_04455 - aminopeptidase, at 988,342 to 988,629 _04455 PS417_04460: PS417_04460 - malate:quinone oxidoreductase, at 988,699 to 990,207 _04460 PS417_04470: PS417_04470 - hypothetical protein, at 990,926 to 991,159 _04470 Position (kb) 988 989 990 991Strain fitness (log2 ratio) -3 -2 -1 0 1at 987.818 kb on - strand, within PS417_04450at 987.818 kb on - strand, within PS417_04450at 987.818 kb on - strand, within PS417_04450at 987.989 kb on + strand, within PS417_04450at 987.990 kb on - strand, within PS417_04450at 987.998 kb on - strand, within PS417_04450at 988.038 kb on - strand, within PS417_04450at 988.076 kb on + strand, within PS417_04450at 988.076 kb on + strand, within PS417_04450at 988.076 kb on + strand, within PS417_04450at 988.076 kb on + strand, within PS417_04450at 988.077 kb on - strand, within PS417_04450at 988.077 kb on - strand, within PS417_04450at 988.081 kb on - strand, within PS417_04450at 988.095 kb on - strand, within PS417_04450at 988.108 kb on + strandat 988.108 kb on + strandat 988.109 kb on - strandat 988.109 kb on - strandat 988.122 kb on + strandat 988.122 kb on + strandat 988.166 kb on - strandat 988.166 kb on - strandat 988.203 kb on + strandat 988.211 kb on - strandat 988.216 kb on + strandat 988.216 kb on + strandat 988.299 kb on + strandat 988.318 kb on - strandat 988.318 kb on - strandat 988.585 kb on - strand, within PS417_04455at 988.632 kb on - strandat 988.706 kb on + strandat 988.706 kb on + strandat 988.707 kb on - strandat 990.370 kb on + strandat 990.408 kb on - strandat 990.523 kb on + strandat 990.524 kb on - strandat 990.538 kb on - strandat 990.538 kb on - strandat 990.716 kb on + strandat 990.804 kb on - strandat 990.852 kb on + strandat 990.854 kb on + strandat 990.855 kb on - strandat 990.855 kb on - strandat 990.855 kb on - strandat 990.871 kb on + strandat 990.912 kb on + strandat 991.188 kb on - strandat 991.188 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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987,818 - PS417_04450 0.31 -0.5
987,818 - PS417_04450 0.31 -1.8
987,818 - PS417_04450 0.31 -1.2
987,989 + PS417_04450 0.67 -1.2
987,990 - PS417_04450 0.67 -1.8
987,998 - PS417_04450 0.69 -0.6
988,038 - PS417_04450 0.77 -1.2
988,076 + PS417_04450 0.85 -0.6
988,076 + PS417_04450 0.85 +0.4
988,076 + PS417_04450 0.85 -1.0
988,076 + PS417_04450 0.85 -0.9
988,077 - PS417_04450 0.85 -0.7
988,077 - PS417_04450 0.85 -0.2
988,081 - PS417_04450 0.86 -0.6
988,095 - PS417_04450 0.88 -0.2
988,108 + +1.4
988,108 + +0.5
988,109 - -0.5
988,109 - -0.4
988,122 + -0.6
988,122 + +0.6
988,166 - +0.3
988,166 - -2.6
988,203 + -0.5
988,211 - -0.1
988,216 + -0.2
988,216 + -0.7
988,299 + +1.0
988,318 - -0.5
988,318 - -0.1
988,585 - PS417_04455 0.84 +0.4
988,632 - -0.4
988,706 + -0.0
988,706 + +0.4
988,707 - +0.0
990,370 + +0.5
990,408 - -0.7
990,523 + +0.9
990,524 - -0.3
990,538 - -1.2
990,538 - -2.9
990,716 + +0.5
990,804 - +0.3
990,852 + +0.6
990,854 + +0.6
990,855 - -0.1
990,855 - -0.5
990,855 - +0.3
990,871 + -0.3
990,912 + +0.1
991,188 - +0.6
991,188 - -0.1

Or see this region's nucleotide sequence