Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00425 and PS417_00430 are separated by 10 nucleotides PS417_00430 and PS417_00435 overlap by 4 nucleotides PS417_00435 and PS417_00440 are separated by 88 nucleotides PS417_00440 and PS417_00445 overlap by 4 nucleotides
PS417_00425: PS417_00425 - thiol:disulfide interchange protein, at 82,991 to 83,626
_00425
PS417_00430: PS417_00430 - endonuclease, at 83,637 to 84,515
_00430
PS417_00435: PS417_00435 - DeoR faimly transcriptional regulator, at 84,512 to 86,566
_00435
PS417_00440: PS417_00440 - N-acetylmuramoyl-L-alanine amidase, at 86,655 to 87,431
_00440
PS417_00445: PS417_00445 - histidine kinase, at 87,428 to 89,215
_00445
Position (kb) 84
85
86
87 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 83.624 kb on + strand at 83.790 kb on + strand, within PS417_00430 at 83.791 kb on - strand, within PS417_00430 at 83.791 kb on - strand, within PS417_00430 at 83.791 kb on - strand, within PS417_00430 at 84.189 kb on + strand, within PS417_00430 at 84.190 kb on - strand, within PS417_00430 at 84.190 kb on - strand, within PS417_00430 at 84.190 kb on - strand, within PS417_00430 at 84.213 kb on + strand, within PS417_00430 at 84.214 kb on - strand, within PS417_00430 at 84.357 kb on - strand, within PS417_00430 at 84.357 kb on - strand, within PS417_00430 at 84.371 kb on + strand, within PS417_00430 at 84.551 kb on - strand at 84.551 kb on - strand at 84.710 kb on - strand at 85.175 kb on - strand, within PS417_00435 at 85.493 kb on + strand, within PS417_00435 at 85.493 kb on + strand, within PS417_00435 at 85.493 kb on + strand, within PS417_00435 at 85.494 kb on - strand, within PS417_00435 at 85.494 kb on - strand, within PS417_00435 at 85.494 kb on - strand, within PS417_00435 at 85.494 kb on - strand, within PS417_00435 at 85.494 kb on - strand, within PS417_00435 at 85.524 kb on - strand, within PS417_00435 at 85.649 kb on + strand, within PS417_00435 at 85.730 kb on + strand, within PS417_00435 at 85.755 kb on + strand, within PS417_00435 at 85.756 kb on - strand, within PS417_00435 at 86.228 kb on + strand, within PS417_00435 at 86.275 kb on - strand, within PS417_00435 at 86.306 kb on - strand, within PS417_00435 at 86.334 kb on + strand, within PS417_00435 at 86.334 kb on + strand, within PS417_00435 at 86.334 kb on + strand, within PS417_00435 at 86.334 kb on + strand, within PS417_00435 at 86.335 kb on - strand, within PS417_00435 at 86.335 kb on - strand, within PS417_00435 at 86.335 kb on - strand, within PS417_00435 at 86.522 kb on + strand at 86.522 kb on + strand at 86.523 kb on - strand at 86.523 kb on - strand at 86.564 kb on + strand at 86.641 kb on + strand at 86.642 kb on - strand at 86.642 kb on - strand at 86.642 kb on - strand at 86.667 kb on + strand at 86.667 kb on + strand at 86.874 kb on + strand, within PS417_00440 at 86.874 kb on + strand, within PS417_00440 at 86.874 kb on + strand, within PS417_00440 at 86.874 kb on + strand, within PS417_00440 at 86.875 kb on - strand, within PS417_00440 at 86.875 kb on - strand, within PS417_00440 at 87.016 kb on - strand, within PS417_00440 at 87.039 kb on - strand, within PS417_00440 at 87.039 kb on - strand, within PS417_00440 at 87.190 kb on + strand, within PS417_00440 at 87.231 kb on + strand, within PS417_00440 at 87.231 kb on + strand, within PS417_00440 at 87.232 kb on - strand, within PS417_00440 at 87.232 kb on - strand, within PS417_00440 at 87.447 kb on + strand at 87.447 kb on + strand at 87.447 kb on + strand at 87.448 kb on - strand at 87.448 kb on - strand at 87.448 kb on - strand at 87.448 kb on - strand at 87.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 83,624 + +1.4 83,790 + PS417_00430 0.17 -0.7 83,791 - PS417_00430 0.18 -0.4 83,791 - PS417_00430 0.18 +0.4 83,791 - PS417_00430 0.18 -0.6 84,189 + PS417_00430 0.63 +0.3 84,190 - PS417_00430 0.63 -0.5 84,190 - PS417_00430 0.63 -1.4 84,190 - PS417_00430 0.63 -1.1 84,213 + PS417_00430 0.66 -0.5 84,214 - PS417_00430 0.66 +0.1 84,357 - PS417_00430 0.82 -0.5 84,357 - PS417_00430 0.82 -2.1 84,371 + PS417_00430 0.84 -1.1 84,551 - -1.5 84,551 - -0.3 84,710 - -0.3 85,175 - PS417_00435 0.32 -0.4 85,493 + PS417_00435 0.48 -0.0 85,493 + PS417_00435 0.48 +0.3 85,493 + PS417_00435 0.48 +0.8 85,494 - PS417_00435 0.48 -0.9 85,494 - PS417_00435 0.48 -0.0 85,494 - PS417_00435 0.48 +0.3 85,494 - PS417_00435 0.48 +0.5 85,494 - PS417_00435 0.48 -0.1 85,524 - PS417_00435 0.49 -0.3 85,649 + PS417_00435 0.55 +1.6 85,730 + PS417_00435 0.59 -1.1 85,755 + PS417_00435 0.60 -0.7 85,756 - PS417_00435 0.61 -1.3 86,228 + PS417_00435 0.84 -0.0 86,275 - PS417_00435 0.86 -0.9 86,306 - PS417_00435 0.87 -1.7 86,334 + PS417_00435 0.89 +0.2 86,334 + PS417_00435 0.89 +0.3 86,334 + PS417_00435 0.89 +0.0 86,334 + PS417_00435 0.89 -0.3 86,335 - PS417_00435 0.89 -0.2 86,335 - PS417_00435 0.89 -1.1 86,335 - PS417_00435 0.89 -1.6 86,522 + -0.2 86,522 + -0.2 86,523 - -0.1 86,523 - -0.5 86,564 + +0.1 86,641 + +0.2 86,642 - -1.4 86,642 - -1.4 86,642 - -1.3 86,667 + -1.0 86,667 + -1.0 86,874 + PS417_00440 0.28 -2.9 86,874 + PS417_00440 0.28 +0.5 86,874 + PS417_00440 0.28 -3.3 86,874 + PS417_00440 0.28 -4.3 86,875 - PS417_00440 0.28 -2.5 86,875 - PS417_00440 0.28 -2.2 87,016 - PS417_00440 0.46 -3.1 87,039 - PS417_00440 0.49 -3.5 87,039 - PS417_00440 0.49 +0.1 87,190 + PS417_00440 0.69 -3.6 87,231 + PS417_00440 0.74 -2.2 87,231 + PS417_00440 0.74 -1.4 87,232 - PS417_00440 0.74 -3.6 87,232 - PS417_00440 0.74 -3.7 87,447 + -0.2 87,447 + -0.6 87,447 + -0.3 87,448 - -0.6 87,448 - -0.3 87,448 - -0.9 87,448 - -1.2 87,478 - -0.6
Or see this region's nucleotide sequence