Strain Fitness in Pseudomonas simiae WCS417 around PS417_16860

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16845 and PS417_16850 overlap by 4 nucleotidesPS417_16850 and PS417_16855 overlap by 4 nucleotidesPS417_16855 and PS417_16860 are separated by 126 nucleotidesPS417_16860 and PS417_16865 are separated by 101 nucleotidesPS417_16865 and PS417_16870 overlap by 4 nucleotides PS417_16845: PS417_16845 - monovalent cation/H+ antiporter subunit E, at 3,675,555 to 3,676,043 _16845 PS417_16850: PS417_16850 - cation:proton antiporter, at 3,676,040 to 3,676,318 _16850 PS417_16855: PS417_16855 - cation:proton antiporter, at 3,676,315 to 3,676,653 _16855 PS417_16860: PS417_16860 - diadenosine tetraphosphate hydrolase, at 3,676,780 to 3,677,238 _16860 PS417_16865: PS417_16865 - HxlR family transcriptional regulator, at 3,677,340 to 3,677,669 _16865 PS417_16870: PS417_16870 - short-chain dehydrogenase, at 3,677,666 to 3,678,448 _16870 Position (kb) 3676 3677 3678Strain fitness (log2 ratio) -1 0 1at 3675.914 kb on + strandat 3676.011 kb on + strandat 3676.011 kb on + strandat 3676.011 kb on + strandat 3676.012 kb on - strandat 3676.012 kb on - strandat 3676.163 kb on + strand, within PS417_16850at 3676.164 kb on - strand, within PS417_16850at 3676.226 kb on + strand, within PS417_16850at 3676.358 kb on + strand, within PS417_16855at 3676.577 kb on + strand, within PS417_16855at 3676.723 kb on + strandat 3676.724 kb on - strandat 3676.778 kb on + strandat 3676.842 kb on - strandat 3676.857 kb on + strand, within PS417_16860at 3676.857 kb on + strand, within PS417_16860at 3676.860 kb on - strand, within PS417_16860at 3676.860 kb on - strand, within PS417_16860at 3676.915 kb on - strand, within PS417_16860at 3677.094 kb on - strand, within PS417_16860at 3677.167 kb on - strand, within PS417_16860at 3677.212 kb on - strandat 3677.274 kb on - strandat 3677.274 kb on - strandat 3677.274 kb on - strandat 3677.301 kb on + strandat 3677.335 kb on - strandat 3677.353 kb on - strandat 3677.586 kb on + strand, within PS417_16865at 3677.700 kb on + strandat 3677.994 kb on + strand, within PS417_16870at 3678.197 kb on + strand, within PS417_16870

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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3,675,914 + -0.3
3,676,011 + +0.2
3,676,011 + +0.6
3,676,011 + -0.0
3,676,012 - -1.2
3,676,012 - -0.2
3,676,163 + PS417_16850 0.44 +0.3
3,676,164 - PS417_16850 0.44 -0.3
3,676,226 + PS417_16850 0.67 -0.1
3,676,358 + PS417_16855 0.13 -0.3
3,676,577 + PS417_16855 0.77 +0.2
3,676,723 + -0.4
3,676,724 - -0.3
3,676,778 + +0.8
3,676,842 - -0.6
3,676,857 + PS417_16860 0.17 -0.5
3,676,857 + PS417_16860 0.17 +1.7
3,676,860 - PS417_16860 0.17 +0.9
3,676,860 - PS417_16860 0.17 +0.8
3,676,915 - PS417_16860 0.29 +0.3
3,677,094 - PS417_16860 0.68 -0.3
3,677,167 - PS417_16860 0.84 -0.0
3,677,212 - -1.0
3,677,274 - +0.8
3,677,274 - -0.1
3,677,274 - -1.5
3,677,301 + +0.3
3,677,335 - -0.6
3,677,353 - +0.1
3,677,586 + PS417_16865 0.75 -0.8
3,677,700 + +0.3
3,677,994 + PS417_16870 0.42 -0.3
3,678,197 + PS417_16870 0.68 +0.0

Or see this region's nucleotide sequence