Strain Fitness in Pseudomonas simiae WCS417 around PS417_07955

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07950 and PS417_07955 are separated by 483 nucleotidesPS417_07955 and PS417_07960 are separated by 65 nucleotides PS417_07950: PS417_07950 - MFS transporter, at 1,740,997 to 1,742,184 _07950 PS417_07955: PS417_07955 - malate:quinone oxidoreductase, at 1,742,668 to 1,744,314 _07955 PS417_07960: PS417_07960 - LysR family transcriptional regulator, at 1,744,380 to 1,745,216 _07960 Position (kb) 1742 1743 1744 1745Strain fitness (log2 ratio) -2 -1 0 1 2at 1742.001 kb on - strand, within PS417_07950at 1742.189 kb on - strandat 1742.194 kb on + strandat 1742.194 kb on + strandat 1742.195 kb on - strandat 1742.231 kb on + strandat 1742.255 kb on + strandat 1742.256 kb on - strandat 1742.256 kb on - strandat 1742.412 kb on + strandat 1742.413 kb on - strandat 1742.413 kb on - strandat 1742.413 kb on - strandat 1742.430 kb on + strandat 1742.430 kb on + strandat 1742.431 kb on - strandat 1742.438 kb on + strandat 1742.438 kb on + strandat 1742.438 kb on + strandat 1742.439 kb on - strandat 1742.439 kb on - strandat 1742.440 kb on + strandat 1742.440 kb on + strandat 1742.470 kb on - strandat 1742.488 kb on + strandat 1742.489 kb on - strandat 1742.512 kb on + strandat 1742.512 kb on + strandat 1742.513 kb on - strandat 1742.607 kb on + strandat 1742.651 kb on + strandat 1742.656 kb on + strandat 1742.656 kb on + strandat 1742.657 kb on - strandat 1742.781 kb on + strandat 1742.782 kb on - strandat 1742.782 kb on - strandat 1742.801 kb on + strandat 1742.801 kb on + strandat 1742.929 kb on + strand, within PS417_07955at 1742.929 kb on + strand, within PS417_07955at 1743.128 kb on - strand, within PS417_07955at 1743.327 kb on + strandat 1743.328 kb on - strand, within PS417_07955at 1743.401 kb on - strand, within PS417_07955at 1743.518 kb on - strand, within PS417_07955at 1743.868 kb on + strand, within PS417_07955at 1743.868 kb on + strand, within PS417_07955at 1743.869 kb on - strand, within PS417_07955at 1743.869 kb on - strand, within PS417_07955at 1744.139 kb on - strand, within PS417_07955at 1744.189 kb on + strandat 1744.189 kb on + strandat 1744.312 kb on + strandat 1744.368 kb on + strandat 1744.368 kb on + strandat 1744.451 kb on - strandat 1744.451 kb on - strandat 1744.778 kb on + strand, within PS417_07960at 1744.778 kb on + strand, within PS417_07960at 1744.778 kb on + strand, within PS417_07960at 1744.778 kb on + strand, within PS417_07960at 1744.779 kb on - strand, within PS417_07960at 1744.779 kb on - strand, within PS417_07960at 1744.779 kb on - strand, within PS417_07960at 1744.779 kb on - strand, within PS417_07960at 1744.782 kb on + strandat 1744.782 kb on + strand, within PS417_07960at 1744.782 kb on + strand, within PS417_07960at 1744.782 kb on + strand, within PS417_07960at 1744.782 kb on + strand, within PS417_07960at 1744.783 kb on - strand, within PS417_07960at 1744.783 kb on - strand, within PS417_07960at 1744.783 kb on - strand, within PS417_07960at 1744.783 kb on - strand, within PS417_07960at 1744.783 kb on - strand, within PS417_07960at 1744.803 kb on - strand, within PS417_07960at 1744.909 kb on + strand, within PS417_07960at 1744.909 kb on + strandat 1744.909 kb on + strand, within PS417_07960at 1744.910 kb on - strand, within PS417_07960at 1744.910 kb on - strand, within PS417_07960at 1744.910 kb on - strand, within PS417_07960at 1745.027 kb on - strand, within PS417_07960at 1745.097 kb on + strand, within PS417_07960at 1745.097 kb on + strand, within PS417_07960at 1745.259 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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1,742,001 - PS417_07950 0.85 -0.1
1,742,189 - +0.4
1,742,194 + +0.6
1,742,194 + +1.6
1,742,195 - -0.4
1,742,231 + -0.9
1,742,255 + +0.5
1,742,256 - -1.3
1,742,256 - +0.0
1,742,412 + +1.2
1,742,413 - -0.3
1,742,413 - -1.1
1,742,413 - -0.7
1,742,430 + -0.6
1,742,430 + +0.4
1,742,431 - -0.2
1,742,438 + +0.1
1,742,438 + +0.2
1,742,438 + +0.2
1,742,439 - -1.5
1,742,439 - -1.0
1,742,440 + +0.2
1,742,440 + +0.8
1,742,470 - -0.9
1,742,488 + +1.0
1,742,489 - -0.4
1,742,512 + +1.2
1,742,512 + +1.7
1,742,513 - -0.7
1,742,607 + +1.6
1,742,651 + +1.6
1,742,656 + +2.2
1,742,656 + -0.4
1,742,657 - -0.8
1,742,781 + -1.8
1,742,782 - +0.7
1,742,782 - -0.3
1,742,801 + -0.7
1,742,801 + -2.6
1,742,929 + PS417_07955 0.16 -1.8
1,742,929 + PS417_07955 0.16 -1.3
1,743,128 - PS417_07955 0.28 -2.5
1,743,327 + -0.7
1,743,328 - PS417_07955 0.40 -1.1
1,743,401 - PS417_07955 0.45 -1.0
1,743,518 - PS417_07955 0.52 -1.1
1,743,868 + PS417_07955 0.73 -0.9
1,743,868 + PS417_07955 0.73 -0.3
1,743,869 - PS417_07955 0.73 -2.7
1,743,869 - PS417_07955 0.73 -0.6
1,744,139 - PS417_07955 0.89 -1.2
1,744,189 + -2.1
1,744,189 + -2.4
1,744,312 + -1.3
1,744,368 + +0.1
1,744,368 + +0.3
1,744,451 - -0.1
1,744,451 - -1.2
1,744,778 + PS417_07960 0.48 -0.1
1,744,778 + PS417_07960 0.48 -0.3
1,744,778 + PS417_07960 0.48 -0.0
1,744,778 + PS417_07960 0.48 -0.6
1,744,779 - PS417_07960 0.48 -0.4
1,744,779 - PS417_07960 0.48 +0.0
1,744,779 - PS417_07960 0.48 -0.0
1,744,779 - PS417_07960 0.48 +0.4
1,744,782 + +0.4
1,744,782 + PS417_07960 0.48 -0.4
1,744,782 + PS417_07960 0.48 +1.3
1,744,782 + PS417_07960 0.48 -1.2
1,744,782 + PS417_07960 0.48 -1.4
1,744,783 - PS417_07960 0.48 -0.9
1,744,783 - PS417_07960 0.48 -2.4
1,744,783 - PS417_07960 0.48 -0.7
1,744,783 - PS417_07960 0.48 -0.2
1,744,783 - PS417_07960 0.48 -0.3
1,744,803 - PS417_07960 0.51 -0.0
1,744,909 + PS417_07960 0.63 -1.1
1,744,909 + -0.1
1,744,909 + PS417_07960 0.63 +0.3
1,744,910 - PS417_07960 0.63 +0.2
1,744,910 - PS417_07960 0.63 -0.1
1,744,910 - PS417_07960 0.63 -0.0
1,745,027 - PS417_07960 0.77 -0.8
1,745,097 + PS417_07960 0.86 +0.5
1,745,097 + PS417_07960 0.86 +1.8
1,745,259 - -0.1

Or see this region's nucleotide sequence