Strain Fitness in Pseudomonas simiae WCS417 around PS417_17770

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17765 and PS417_17770 overlap by 11 nucleotidesPS417_17770 and PS417_17775 are separated by 1 nucleotidesPS417_17775 and PS417_17780 are separated by 276 nucleotides PS417_17765: PS417_17765 - iron ABC transporter permease, at 3,877,289 to 3,878,350 _17765 PS417_17770: PS417_17770 - ABC transporter permease, at 3,878,340 to 3,880,802 _17770 PS417_17775: PS417_17775 - ABC transporter ATP-binding protein, at 3,880,804 to 3,881,472 _17775 PS417_17780: PS417_17780 - Ais protein, at 3,881,749 to 3,882,423 _17780 Position (kb) 3878 3879 3880 3881Strain fitness (log2 ratio) -2 -1 0 1at 3877.357 kb on + strandat 3877.701 kb on + strand, within PS417_17765at 3877.755 kb on + strand, within PS417_17765at 3877.761 kb on + strand, within PS417_17765at 3877.761 kb on + strand, within PS417_17765at 3877.762 kb on - strand, within PS417_17765at 3877.762 kb on - strand, within PS417_17765at 3878.007 kb on + strand, within PS417_17765at 3878.007 kb on + strandat 3878.163 kb on + strand, within PS417_17765at 3878.163 kb on + strand, within PS417_17765at 3878.164 kb on - strand, within PS417_17765at 3878.341 kb on + strandat 3878.341 kb on + strandat 3878.341 kb on + strandat 3878.807 kb on + strand, within PS417_17770at 3878.945 kb on + strand, within PS417_17770at 3878.946 kb on - strand, within PS417_17770at 3878.974 kb on + strand, within PS417_17770at 3879.024 kb on + strand, within PS417_17770at 3879.024 kb on + strand, within PS417_17770at 3879.113 kb on + strand, within PS417_17770at 3880.044 kb on - strand, within PS417_17770at 3880.047 kb on + strand, within PS417_17770at 3880.121 kb on + strand, within PS417_17770at 3880.122 kb on - strand, within PS417_17770at 3880.261 kb on - strand, within PS417_17770at 3880.380 kb on - strand, within PS417_17770at 3880.655 kb on - strandat 3880.655 kb on - strandat 3880.658 kb on + strandat 3880.658 kb on + strandat 3880.716 kb on + strandat 3881.441 kb on + strandat 3881.441 kb on + strandat 3881.442 kb on - strandat 3881.701 kb on + strandat 3881.702 kb on - strandat 3881.720 kb on + strandat 3881.724 kb on + strandat 3881.724 kb on + strandat 3881.725 kb on - strandat 3881.725 kb on - strandat 3881.727 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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3,877,357 + -0.2
3,877,701 + PS417_17765 0.39 -1.7
3,877,755 + PS417_17765 0.44 -0.3
3,877,761 + PS417_17765 0.44 -1.7
3,877,761 + PS417_17765 0.44 -0.2
3,877,762 - PS417_17765 0.45 +1.7
3,877,762 - PS417_17765 0.45 -0.1
3,878,007 + PS417_17765 0.68 +0.2
3,878,007 + +1.4
3,878,163 + PS417_17765 0.82 +0.2
3,878,163 + PS417_17765 0.82 +0.4
3,878,164 - PS417_17765 0.82 +0.3
3,878,341 + +0.2
3,878,341 + -0.0
3,878,341 + -0.2
3,878,807 + PS417_17770 0.19 +0.5
3,878,945 + PS417_17770 0.25 -0.2
3,878,946 - PS417_17770 0.25 -0.2
3,878,974 + PS417_17770 0.26 +0.5
3,879,024 + PS417_17770 0.28 -0.3
3,879,024 + PS417_17770 0.28 -1.1
3,879,113 + PS417_17770 0.31 -1.0
3,880,044 - PS417_17770 0.69 +0.9
3,880,047 + PS417_17770 0.69 -0.6
3,880,121 + PS417_17770 0.72 -0.1
3,880,122 - PS417_17770 0.72 -0.4
3,880,261 - PS417_17770 0.78 -0.5
3,880,380 - PS417_17770 0.83 -0.2
3,880,655 - -0.2
3,880,655 - -0.4
3,880,658 + -0.9
3,880,658 + -0.3
3,880,716 + -0.0
3,881,441 + -0.5
3,881,441 + -2.1
3,881,442 - +0.9
3,881,701 + -1.6
3,881,702 - +0.6
3,881,720 + -0.7
3,881,724 + -1.2
3,881,724 + -1.5
3,881,725 - +0.7
3,881,725 - +0.9
3,881,727 + -2.1

Or see this region's nucleotide sequence