Strain Fitness in Pseudomonas simiae WCS417 around PS417_16910

Experiment: Fraxetin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16900 and PS417_16905 overlap by 4 nucleotidesPS417_16905 and PS417_16910 are separated by 149 nucleotidesPS417_16910 and PS417_16915 overlap by 1 nucleotides PS417_16900: PS417_16900 - peptidylprolyl isomerase, at 3,684,445 to 3,684,948 _16900 PS417_16905: PS417_16905 - UDP-2,3-diacylglucosamine hydrolase, at 3,684,945 to 3,685,694 _16905 PS417_16910: PS417_16910 - multidrug resistance protein B, at 3,685,844 to 3,687,373 _16910 PS417_16915: PS417_16915 - hemolysin D, at 3,687,373 to 3,688,572 _16915 Position (kb) 3685 3686 3687 3688Strain fitness (log2 ratio) -2 -1 0 1at 3685.772 kb on - strandat 3685.832 kb on + strandat 3685.832 kb on + strandat 3685.832 kb on + strandat 3685.833 kb on - strandat 3685.833 kb on - strandat 3685.969 kb on - strandat 3685.969 kb on - strandat 3685.969 kb on - strandat 3685.969 kb on - strandat 3686.061 kb on + strand, within PS417_16910at 3686.061 kb on + strand, within PS417_16910at 3686.085 kb on + strand, within PS417_16910at 3686.086 kb on - strand, within PS417_16910at 3686.086 kb on - strandat 3686.086 kb on - strand, within PS417_16910at 3686.395 kb on - strand, within PS417_16910at 3686.766 kb on + strand, within PS417_16910at 3686.767 kb on - strand, within PS417_16910at 3686.767 kb on - strand, within PS417_16910at 3686.880 kb on + strand, within PS417_16910at 3687.041 kb on + strandat 3687.082 kb on + strand, within PS417_16910at 3687.461 kb on + strandat 3687.461 kb on + strandat 3687.461 kb on + strandat 3687.598 kb on - strand, within PS417_16915at 3687.734 kb on + strand, within PS417_16915at 3687.735 kb on - strand, within PS417_16915at 3687.896 kb on + strand, within PS417_16915at 3687.897 kb on - strand, within PS417_16915at 3687.897 kb on - strand, within PS417_16915at 3688.131 kb on + strand, within PS417_16915at 3688.132 kb on - strand, within PS417_16915at 3688.132 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 2 mM; solid stress
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3,685,772 - +0.4
3,685,832 + -0.1
3,685,832 + -0.3
3,685,832 + +1.0
3,685,833 - -1.7
3,685,833 - +0.3
3,685,969 - +0.0
3,685,969 - -0.6
3,685,969 - +0.5
3,685,969 - -0.6
3,686,061 + PS417_16910 0.14 -1.0
3,686,061 + PS417_16910 0.14 -1.1
3,686,085 + PS417_16910 0.16 +0.5
3,686,086 - PS417_16910 0.16 -1.9
3,686,086 - -0.3
3,686,086 - PS417_16910 0.16 -1.2
3,686,395 - PS417_16910 0.36 -0.3
3,686,766 + PS417_16910 0.60 +0.1
3,686,767 - PS417_16910 0.60 -0.5
3,686,767 - PS417_16910 0.60 -0.6
3,686,880 + PS417_16910 0.68 -0.6
3,687,041 + -0.8
3,687,082 + PS417_16910 0.81 -0.7
3,687,461 + +1.0
3,687,461 + -0.6
3,687,461 + -0.0
3,687,598 - PS417_16915 0.19 -0.6
3,687,734 + PS417_16915 0.30 -0.5
3,687,735 - PS417_16915 0.30 -0.4
3,687,896 + PS417_16915 0.44 -0.1
3,687,897 - PS417_16915 0.44 +0.2
3,687,897 - PS417_16915 0.44 -0.4
3,688,131 + PS417_16915 0.63 -0.6
3,688,132 - PS417_16915 0.63 -0.2
3,688,132 - +1.2

Or see this region's nucleotide sequence