Strain Fitness in Pseudomonas simiae WCS417 around PS417_03830

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03820 and PS417_03825 overlap by 4 nucleotidesPS417_03825 and PS417_03830 are separated by 130 nucleotidesPS417_03830 and PS417_03835 are separated by 300 nucleotidesPS417_03835 and PS417_03840 are separated by 10 nucleotidesPS417_03840 and PS417_03845 are separated by 5 nucleotidesPS417_03845 and PS417_03850 are separated by 94 nucleotidesPS417_03850 and PS417_03855 are separated by 192 nucleotides PS417_03820: PS417_03820 - ribosomal large subunit pseudouridine synthase D, at 861,582 to 862,544 _03820 PS417_03825: PS417_03825 - laccase, at 862,541 to 863,266 _03825 PS417_03830: PS417_03830 - protein disaggregation chaperone, at 863,397 to 865,961 _03830 PS417_03835: PS417_03835 - tRNA-Asn, at 866,262 to 866,337 _03835 PS417_03840: PS417_03840 - tRNA-Pro, at 866,348 to 866,424 _03840 PS417_03845: PS417_03845 - tRNA-Lys, at 866,430 to 866,505 _03845 PS417_03850: PS417_03850 - tRNA-Pro, at 866,600 to 866,676 _03850 PS417_03855: PS417_03855 - NADH dehydrogenase, at 866,869 to 868,167 _03855 Position (kb) 863 864 865 866Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 862.717 kb on + strand, within PS417_03825at 862.718 kb on - strand, within PS417_03825at 862.974 kb on + strand, within PS417_03825at 862.974 kb on + strand, within PS417_03825at 862.974 kb on + strand, within PS417_03825at 862.975 kb on - strand, within PS417_03825at 863.117 kb on + strand, within PS417_03825at 863.117 kb on + strand, within PS417_03825at 863.118 kb on - strand, within PS417_03825at 863.118 kb on - strand, within PS417_03825at 863.118 kb on - strand, within PS417_03825at 863.118 kb on - strand, within PS417_03825at 863.118 kb on - strand, within PS417_03825at 863.118 kb on - strand, within PS417_03825at 863.119 kb on + strand, within PS417_03825at 863.119 kb on + strand, within PS417_03825at 863.119 kb on + strand, within PS417_03825at 863.120 kb on - strand, within PS417_03825at 863.248 kb on + strandat 863.249 kb on - strandat 863.324 kb on + strandat 863.324 kb on + strandat 863.325 kb on - strandat 863.325 kb on - strandat 863.325 kb on - strandat 863.325 kb on - strandat 863.332 kb on + strandat 863.363 kb on + strandat 863.364 kb on - strandat 863.364 kb on - strandat 863.366 kb on - strandat 863.396 kb on - strandat 863.402 kb on + strandat 863.426 kb on - strandat 863.531 kb on + strandat 863.642 kb on + strandat 863.642 kb on + strandat 863.642 kb on + strandat 863.642 kb on + strandat 863.643 kb on - strandat 863.643 kb on - strandat 863.643 kb on - strandat 863.882 kb on + strand, within PS417_03830at 863.886 kb on + strand, within PS417_03830at 863.886 kb on + strand, within PS417_03830at 863.887 kb on - strand, within PS417_03830at 864.093 kb on - strand, within PS417_03830at 864.336 kb on - strand, within PS417_03830at 864.360 kb on + strand, within PS417_03830at 864.361 kb on - strand, within PS417_03830at 864.465 kb on + strand, within PS417_03830at 864.535 kb on - strand, within PS417_03830at 864.760 kb on - strand, within PS417_03830at 864.887 kb on + strand, within PS417_03830at 864.887 kb on + strand, within PS417_03830at 864.887 kb on + strand, within PS417_03830at 864.904 kb on - strand, within PS417_03830at 864.989 kb on - strand, within PS417_03830at 865.353 kb on + strand, within PS417_03830at 865.353 kb on + strand, within PS417_03830at 865.354 kb on - strand, within PS417_03830at 865.354 kb on - strand, within PS417_03830at 865.377 kb on + strand, within PS417_03830at 865.772 kb on - strandat 865.807 kb on + strandat 865.813 kb on - strandat 865.825 kb on - strandat 865.825 kb on - strandat 865.980 kb on + strandat 866.677 kb on + strandat 866.843 kb on - strandat 866.852 kb on + strandat 866.852 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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862,717 + PS417_03825 0.24 +0.0
862,718 - PS417_03825 0.24 -0.0
862,974 + PS417_03825 0.60 -0.3
862,974 + PS417_03825 0.60 +0.1
862,974 + PS417_03825 0.60 -1.0
862,975 - PS417_03825 0.60 -0.3
863,117 + PS417_03825 0.79 +0.0
863,117 + PS417_03825 0.79 -1.2
863,118 - PS417_03825 0.79 +1.5
863,118 - PS417_03825 0.79 -0.2
863,118 - PS417_03825 0.79 +0.5
863,118 - PS417_03825 0.79 -0.2
863,118 - PS417_03825 0.79 -1.6
863,118 - PS417_03825 0.79 +0.6
863,119 + PS417_03825 0.80 +0.9
863,119 + PS417_03825 0.80 -1.3
863,119 + PS417_03825 0.80 +0.6
863,120 - PS417_03825 0.80 -1.1
863,248 + -0.0
863,249 - -0.9
863,324 + -0.5
863,324 + -0.2
863,325 - -0.8
863,325 - -1.1
863,325 - -1.2
863,325 - -0.5
863,332 + +1.0
863,363 + +0.3
863,364 - -1.2
863,364 - +0.1
863,366 - -0.0
863,396 - -1.6
863,402 + -0.5
863,426 - -0.8
863,531 + -0.1
863,642 + -0.2
863,642 + -0.4
863,642 + -0.6
863,642 + -0.8
863,643 - -1.2
863,643 - -0.9
863,643 - -0.8
863,882 + PS417_03830 0.19 -0.8
863,886 + PS417_03830 0.19 +0.3
863,886 + PS417_03830 0.19 -1.1
863,887 - PS417_03830 0.19 -1.1
864,093 - PS417_03830 0.27 -0.1
864,336 - PS417_03830 0.37 -1.1
864,360 + PS417_03830 0.38 -0.1
864,361 - PS417_03830 0.38 -1.2
864,465 + PS417_03830 0.42 -1.3
864,535 - PS417_03830 0.44 -1.3
864,760 - PS417_03830 0.53 -0.8
864,887 + PS417_03830 0.58 -0.3
864,887 + PS417_03830 0.58 -1.2
864,887 + PS417_03830 0.58 +0.1
864,904 - PS417_03830 0.59 -0.7
864,989 - PS417_03830 0.62 -0.1
865,353 + PS417_03830 0.76 -1.4
865,353 + PS417_03830 0.76 -1.7
865,354 - PS417_03830 0.76 -0.3
865,354 - PS417_03830 0.76 -0.1
865,377 + PS417_03830 0.77 -1.2
865,772 - -4.4
865,807 + -0.4
865,813 - -3.0
865,825 - -3.1
865,825 - -1.3
865,980 + -0.2
866,677 + -0.4
866,843 - +0.8
866,852 + -0.8
866,852 + +0.3

Or see this region's nucleotide sequence