Experiment: Scopoletin 2 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02940 and PS417_02945 are separated by 82 nucleotides PS417_02945 and PS417_02950 overlap by 4 nucleotides PS417_02950 and PS417_02955 are separated by 185 nucleotides
PS417_02940: PS417_02940 - phosphoribosylaminoimidazolecarboxamide formyltransferase, at 672,256 to 673,863
_02940
PS417_02945: PS417_02945 - Fis family transcriptional regulator, at 673,946 to 674,266
_02945
PS417_02950: PS417_02950 - tRNA-dihydrouridine synthase B, at 674,263 to 675,276
_02950
PS417_02955: PS417_02955 - hypothetical protein, at 675,462 to 676,676
_02955
Position (kb) 674
675
676 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 674.441 kb on - strand, within PS417_02950 at 674.441 kb on - strand, within PS417_02950 at 674.460 kb on - strand, within PS417_02950 at 675.161 kb on - strand, within PS417_02950 at 675.185 kb on - strand at 675.245 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.250 kb on - strand at 675.277 kb on - strand at 675.277 kb on - strand at 675.307 kb on - strand at 675.491 kb on - strand at 675.503 kb on + strand at 675.533 kb on + strand at 675.534 kb on - strand at 675.691 kb on + strand, within PS417_02955 at 675.691 kb on + strand, within PS417_02955 at 675.691 kb on + strand, within PS417_02955 at 675.692 kb on - strand, within PS417_02955 at 675.692 kb on - strand, within PS417_02955 at 675.877 kb on + strand, within PS417_02955 at 675.878 kb on - strand, within PS417_02955
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress remove 674,441 - PS417_02950 0.18 -0.5 674,441 - PS417_02950 0.18 -2.0 674,460 - PS417_02950 0.19 -1.9 675,161 - PS417_02950 0.89 -0.9 675,185 - -0.3 675,245 - +3.0 675,250 - +0.4 675,250 - -0.3 675,250 - -0.8 675,250 - -0.2 675,250 - +0.3 675,250 - +0.1 675,250 - -0.0 675,277 - -0.4 675,277 - +1.2 675,307 - -0.0 675,491 - +0.4 675,503 + -0.2 675,533 + -0.1 675,534 - +0.2 675,691 + PS417_02955 0.19 -0.2 675,691 + PS417_02955 0.19 +0.1 675,691 + PS417_02955 0.19 +0.5 675,692 - PS417_02955 0.19 -0.1 675,692 - PS417_02955 0.19 -0.1 675,877 + PS417_02955 0.34 +0.4 675,878 - PS417_02955 0.34 -0.1
Or see this region's nucleotide sequence