Strain Fitness in Pseudomonas simiae WCS417 around PS417_27075

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27070 and PS417_27075 are separated by 99 nucleotidesPS417_27075 and PS417_27080 are separated by 30 nucleotides PS417_27070: PS417_27070 - alpha/beta hydrolase, at 5,843,724 to 5,844,650 _27070 PS417_27075: PS417_27075 - thiol-disulfide isomerase, at 5,844,750 to 5,845,325 _27075 PS417_27080: PS417_27080 - penicillin amidase, at 5,845,356 to 5,847,710 _27080 Position (kb) 5844 5845 5846Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5843.753 kb on + strandat 5843.753 kb on + strandat 5843.753 kb on + strandat 5843.753 kb on + strandat 5843.753 kb on + strandat 5843.754 kb on - strandat 5843.754 kb on - strandat 5843.754 kb on - strandat 5843.754 kb on - strandat 5843.754 kb on - strandat 5843.754 kb on - strandat 5843.759 kb on - strandat 5843.759 kb on - strandat 5844.091 kb on + strand, within PS417_27070at 5844.091 kb on + strand, within PS417_27070at 5844.092 kb on - strand, within PS417_27070at 5844.094 kb on + strand, within PS417_27070at 5844.094 kb on + strand, within PS417_27070at 5844.094 kb on + strand, within PS417_27070at 5844.095 kb on - strand, within PS417_27070at 5844.095 kb on - strand, within PS417_27070at 5844.095 kb on - strand, within PS417_27070at 5844.095 kb on - strand, within PS417_27070at 5844.095 kb on - strand, within PS417_27070at 5844.298 kb on + strand, within PS417_27070at 5844.431 kb on - strand, within PS417_27070at 5844.650 kb on + strandat 5844.651 kb on - strandat 5844.724 kb on + strandat 5844.725 kb on - strandat 5844.725 kb on - strandat 5844.725 kb on - strandat 5844.741 kb on + strandat 5844.742 kb on - strandat 5844.742 kb on - strandat 5844.826 kb on - strand, within PS417_27075at 5844.826 kb on - strand, within PS417_27075at 5845.035 kb on + strand, within PS417_27075at 5845.035 kb on + strand, within PS417_27075at 5845.188 kb on + strand, within PS417_27075at 5845.208 kb on + strand, within PS417_27075at 5845.209 kb on - strand, within PS417_27075at 5845.226 kb on + strand, within PS417_27075at 5845.267 kb on + strand, within PS417_27075at 5845.268 kb on - strandat 5845.419 kb on + strandat 5845.419 kb on + strandat 5845.419 kb on + strandat 5845.420 kb on - strandat 5845.425 kb on + strandat 5845.425 kb on + strandat 5845.560 kb on + strandat 5845.560 kb on + strandat 5845.560 kb on + strandat 5845.561 kb on - strandat 5845.704 kb on + strand, within PS417_27080at 5845.704 kb on + strand, within PS417_27080at 5845.704 kb on + strand, within PS417_27080at 5845.704 kb on + strand, within PS417_27080at 5845.704 kb on + strand, within PS417_27080at 5845.704 kb on + strand, within PS417_27080at 5845.705 kb on - strand, within PS417_27080at 5845.705 kb on - strand, within PS417_27080at 5845.705 kb on - strand, within PS417_27080at 5845.755 kb on + strand, within PS417_27080at 5845.756 kb on - strand, within PS417_27080at 5845.756 kb on - strand, within PS417_27080at 5845.816 kb on + strand, within PS417_27080at 5845.817 kb on - strand, within PS417_27080at 5845.817 kb on - strand, within PS417_27080at 5845.817 kb on - strandat 5845.817 kb on - strand, within PS417_27080at 5845.869 kb on + strand, within PS417_27080at 5845.869 kb on + strand, within PS417_27080at 5845.869 kb on + strand, within PS417_27080at 5845.871 kb on + strand, within PS417_27080at 5845.872 kb on - strand, within PS417_27080at 5845.878 kb on + strand, within PS417_27080at 5845.879 kb on - strand, within PS417_27080at 5845.920 kb on + strand, within PS417_27080at 5845.920 kb on + strand, within PS417_27080at 5845.921 kb on - strand, within PS417_27080at 5845.921 kb on - strand, within PS417_27080at 5845.921 kb on - strand, within PS417_27080at 5846.217 kb on + strand, within PS417_27080at 5846.217 kb on + strand, within PS417_27080at 5846.218 kb on - strand, within PS417_27080at 5846.223 kb on + strand, within PS417_27080

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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5,843,753 + +0.3
5,843,753 + +0.1
5,843,753 + -0.1
5,843,753 + -0.6
5,843,753 + +0.5
5,843,754 - +0.3
5,843,754 - +0.5
5,843,754 - -0.2
5,843,754 - -0.9
5,843,754 - +0.4
5,843,754 - -0.7
5,843,759 - -0.1
5,843,759 - +0.8
5,844,091 + PS417_27070 0.40 -0.3
5,844,091 + PS417_27070 0.40 +0.4
5,844,092 - PS417_27070 0.40 +1.3
5,844,094 + PS417_27070 0.40 -1.0
5,844,094 + PS417_27070 0.40 +0.1
5,844,094 + PS417_27070 0.40 +0.2
5,844,095 - PS417_27070 0.40 -0.3
5,844,095 - PS417_27070 0.40 -0.8
5,844,095 - PS417_27070 0.40 -0.1
5,844,095 - PS417_27070 0.40 +0.2
5,844,095 - PS417_27070 0.40 +0.2
5,844,298 + PS417_27070 0.62 -0.3
5,844,431 - PS417_27070 0.76 -0.1
5,844,650 + -2.5
5,844,651 - -0.1
5,844,724 + -0.5
5,844,725 - +0.7
5,844,725 - +0.0
5,844,725 - +1.7
5,844,741 + +0.1
5,844,742 - -0.3
5,844,742 - -0.3
5,844,826 - PS417_27075 0.13 +0.2
5,844,826 - PS417_27075 0.13 -1.5
5,845,035 + PS417_27075 0.49 -0.8
5,845,035 + PS417_27075 0.49 +1.4
5,845,188 + PS417_27075 0.76 -0.9
5,845,208 + PS417_27075 0.80 -0.2
5,845,209 - PS417_27075 0.80 +0.2
5,845,226 + PS417_27075 0.83 -1.1
5,845,267 + PS417_27075 0.90 +0.4
5,845,268 - +0.4
5,845,419 + -0.3
5,845,419 + +2.5
5,845,419 + +0.7
5,845,420 - -0.6
5,845,425 + -0.3
5,845,425 + -0.2
5,845,560 + +0.5
5,845,560 + +0.1
5,845,560 + -0.3
5,845,561 - +0.3
5,845,704 + PS417_27080 0.15 +0.4
5,845,704 + PS417_27080 0.15 +1.2
5,845,704 + PS417_27080 0.15 +0.6
5,845,704 + PS417_27080 0.15 -0.1
5,845,704 + PS417_27080 0.15 +0.4
5,845,704 + PS417_27080 0.15 +0.4
5,845,705 - PS417_27080 0.15 +3.1
5,845,705 - PS417_27080 0.15 +0.8
5,845,705 - PS417_27080 0.15 -0.2
5,845,755 + PS417_27080 0.17 -0.3
5,845,756 - PS417_27080 0.17 +1.3
5,845,756 - PS417_27080 0.17 -0.4
5,845,816 + PS417_27080 0.20 +0.3
5,845,817 - PS417_27080 0.20 -0.7
5,845,817 - PS417_27080 0.20 -0.2
5,845,817 - +1.5
5,845,817 - PS417_27080 0.20 +0.6
5,845,869 + PS417_27080 0.22 -0.9
5,845,869 + PS417_27080 0.22 -0.7
5,845,869 + PS417_27080 0.22 +0.1
5,845,871 + PS417_27080 0.22 -0.6
5,845,872 - PS417_27080 0.22 +1.0
5,845,878 + PS417_27080 0.22 -0.2
5,845,879 - PS417_27080 0.22 -0.1
5,845,920 + PS417_27080 0.24 -1.5
5,845,920 + PS417_27080 0.24 +0.1
5,845,921 - PS417_27080 0.24 -0.5
5,845,921 - PS417_27080 0.24 -0.2
5,845,921 - PS417_27080 0.24 -0.5
5,846,217 + PS417_27080 0.37 +2.2
5,846,217 + PS417_27080 0.37 -0.0
5,846,218 - PS417_27080 0.37 -0.5
5,846,223 + PS417_27080 0.37 +0.3

Or see this region's nucleotide sequence