Strain Fitness in Pseudomonas simiae WCS417 around PS417_23250

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23245 and PS417_23250 are separated by 2 nucleotidesPS417_23250 and PS417_23255 are separated by 108 nucleotidesPS417_23255 and PS417_23265 are separated by 587 nucleotides PS417_23245: PS417_23245 - queuine tRNA-ribosyltransferase, at 5,034,337 to 5,035,461 _23245 PS417_23250: PS417_23250 - S-adenosylmethionine tRNA ribosyltransferase, at 5,035,464 to 5,036,507 _23250 PS417_23255: PS417_23255 - tRNA-Leu, at 5,036,616 to 5,036,700 _23255 PS417_23265: PS417_23265 - 5S ribosomal RNA, at 5,037,288 to 5,037,403 _23265 Position (kb) 5035 5036 5037Strain fitness (log2 ratio) -2 -1 0 1 2at 5034.701 kb on - strand, within PS417_23245at 5035.452 kb on + strandat 5035.453 kb on - strandat 5035.461 kb on + strandat 5035.461 kb on + strandat 5035.461 kb on + strandat 5035.462 kb on - strandat 5035.462 kb on - strandat 5035.462 kb on - strandat 5035.462 kb on - strandat 5035.462 kb on - strandat 5035.466 kb on - strandat 5035.558 kb on + strandat 5035.680 kb on - strand, within PS417_23250at 5035.680 kb on - strand, within PS417_23250at 5035.847 kb on + strand, within PS417_23250at 5036.061 kb on + strand, within PS417_23250at 5036.061 kb on + strand, within PS417_23250at 5036.062 kb on - strand, within PS417_23250at 5036.062 kb on - strand, within PS417_23250at 5036.062 kb on - strand, within PS417_23250at 5036.064 kb on - strand, within PS417_23250at 5036.065 kb on + strand, within PS417_23250at 5036.066 kb on - strand, within PS417_23250at 5036.066 kb on - strandat 5036.066 kb on - strand, within PS417_23250at 5036.066 kb on - strand, within PS417_23250at 5036.081 kb on + strand, within PS417_23250at 5036.110 kb on - strand, within PS417_23250at 5036.522 kb on - strandat 5036.926 kb on - strandat 5037.086 kb on - strandat 5037.094 kb on + strandat 5037.094 kb on + strandat 5037.095 kb on - strandat 5037.098 kb on + strandat 5037.098 kb on + strandat 5037.099 kb on - strandat 5037.099 kb on - strandat 5037.099 kb on - strandat 5037.099 kb on - strandat 5037.099 kb on - strandat 5037.156 kb on + strandat 5037.156 kb on + strandat 5037.157 kb on - strandat 5037.208 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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5,034,701 - PS417_23245 0.32 -0.0
5,035,452 + +2.5
5,035,453 - -0.0
5,035,461 + -1.5
5,035,461 + -1.9
5,035,461 + -1.5
5,035,462 - +0.1
5,035,462 - +0.2
5,035,462 - +1.0
5,035,462 - -0.3
5,035,462 - -0.3
5,035,466 - +0.1
5,035,558 + +0.5
5,035,680 - PS417_23250 0.21 +1.2
5,035,680 - PS417_23250 0.21 -1.3
5,035,847 + PS417_23250 0.37 -0.3
5,036,061 + PS417_23250 0.57 +0.1
5,036,061 + PS417_23250 0.57 -0.6
5,036,062 - PS417_23250 0.57 -0.6
5,036,062 - PS417_23250 0.57 -0.5
5,036,062 - PS417_23250 0.57 -0.1
5,036,064 - PS417_23250 0.57 -2.3
5,036,065 + PS417_23250 0.58 +1.1
5,036,066 - PS417_23250 0.58 -0.5
5,036,066 - +1.5
5,036,066 - PS417_23250 0.58 -0.3
5,036,066 - PS417_23250 0.58 -0.9
5,036,081 + PS417_23250 0.59 -1.6
5,036,110 - PS417_23250 0.62 -0.5
5,036,522 - -0.8
5,036,926 - -0.6
5,037,086 - -0.2
5,037,094 + -0.2
5,037,094 + +0.3
5,037,095 - -1.9
5,037,098 + -0.5
5,037,098 + -0.6
5,037,099 - +0.5
5,037,099 - -0.4
5,037,099 - -0.7
5,037,099 - -0.6
5,037,099 - -0.1
5,037,156 + -0.0
5,037,156 + +0.2
5,037,157 - -0.3
5,037,208 + +1.2

Or see this region's nucleotide sequence