Strain Fitness in Pseudomonas simiae WCS417 around PS417_19225

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19220 and PS417_19225 are separated by 212 nucleotidesPS417_19225 and PS417_19230 are separated by 134 nucleotides PS417_19220: PS417_19220 - hypothetical protein, at 4,165,558 to 4,170,402 _19220 PS417_19225: PS417_19225 - FAD-dependent cmnm(5)s(2)U34 oxidoreductase, at 4,170,615 to 4,172,615 _19225 PS417_19230: PS417_19230 - asparagine synthase, at 4,172,750 to 4,174,522 _19230 Position (kb) 4170 4171 4172 4173Strain fitness (log2 ratio) -2 -1 0 1at 4169.783 kb on + strand, within PS417_19220at 4169.783 kb on + strand, within PS417_19220at 4169.844 kb on - strand, within PS417_19220at 4169.844 kb on - strandat 4170.038 kb on + strandat 4170.065 kb on + strandat 4170.135 kb on - strandat 4170.224 kb on - strandat 4170.506 kb on + strandat 4170.526 kb on + strandat 4170.690 kb on + strandat 4170.691 kb on - strandat 4170.726 kb on + strandat 4170.895 kb on + strand, within PS417_19225at 4170.903 kb on + strand, within PS417_19225at 4171.867 kb on + strand, within PS417_19225at 4172.100 kb on + strand, within PS417_19225at 4172.100 kb on + strand, within PS417_19225at 4172.101 kb on - strand, within PS417_19225at 4172.101 kb on - strand, within PS417_19225at 4172.310 kb on + strand, within PS417_19225at 4172.361 kb on + strand, within PS417_19225at 4172.362 kb on - strand, within PS417_19225at 4172.375 kb on + strand, within PS417_19225at 4172.427 kb on + strandat 4172.428 kb on - strandat 4172.578 kb on + strandat 4172.645 kb on - strandat 4172.667 kb on - strandat 4172.750 kb on - strandat 4172.760 kb on + strandat 4172.985 kb on - strand, within PS417_19230at 4172.985 kb on - strand, within PS417_19230at 4172.985 kb on - strand, within PS417_19230at 4173.036 kb on - strand, within PS417_19230at 4173.192 kb on - strand, within PS417_19230at 4173.192 kb on - strand, within PS417_19230at 4173.260 kb on - strand, within PS417_19230at 4173.296 kb on + strand, within PS417_19230at 4173.296 kb on + strand, within PS417_19230at 4173.332 kb on - strand, within PS417_19230

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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4,169,783 + PS417_19220 0.87 -0.4
4,169,783 + PS417_19220 0.87 -0.0
4,169,844 - PS417_19220 0.88 -0.1
4,169,844 - +0.8
4,170,038 + +1.6
4,170,065 + -0.6
4,170,135 - -0.5
4,170,224 - +0.4
4,170,506 + +0.1
4,170,526 + +1.2
4,170,690 + -0.0
4,170,691 - +1.0
4,170,726 + +0.0
4,170,895 + PS417_19225 0.14 -0.1
4,170,903 + PS417_19225 0.14 -0.5
4,171,867 + PS417_19225 0.63 -1.1
4,172,100 + PS417_19225 0.74 -0.1
4,172,100 + PS417_19225 0.74 -0.6
4,172,101 - PS417_19225 0.74 -0.8
4,172,101 - PS417_19225 0.74 -0.2
4,172,310 + PS417_19225 0.85 -1.1
4,172,361 + PS417_19225 0.87 -2.0
4,172,362 - PS417_19225 0.87 +0.6
4,172,375 + PS417_19225 0.88 -0.6
4,172,427 + +0.6
4,172,428 - +0.1
4,172,578 + +0.7
4,172,645 - +0.7
4,172,667 - -0.7
4,172,750 - -0.3
4,172,760 + -0.2
4,172,985 - PS417_19230 0.13 +1.2
4,172,985 - PS417_19230 0.13 +0.0
4,172,985 - PS417_19230 0.13 +0.4
4,173,036 - PS417_19230 0.16 +0.0
4,173,192 - PS417_19230 0.25 +0.2
4,173,192 - PS417_19230 0.25 +1.2
4,173,260 - PS417_19230 0.29 +0.8
4,173,296 + PS417_19230 0.31 -0.2
4,173,296 + PS417_19230 0.31 -0.9
4,173,332 - PS417_19230 0.33 -0.5

Or see this region's nucleotide sequence