Strain Fitness in Pseudomonas simiae WCS417 around PS417_13270

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13265 and PS417_13270 are separated by 295 nucleotidesPS417_13270 and PS417_13275 overlap by 4 nucleotides PS417_13265: PS417_13265 - peptide synthetase, at 2,906,806 to 2,913,225 _13265 PS417_13270: PS417_13270 - lipoprotein, at 2,913,521 to 2,914,405 _13270 PS417_13275: PS417_13275 - membrane protein, at 2,914,402 to 2,917,455 _13275 Position (kb) 2913 2914 2915Strain fitness (log2 ratio) -1 0 1at 2912.862 kb on - strandat 2913.196 kb on + strandat 2913.196 kb on + strandat 2913.197 kb on - strandat 2913.623 kb on + strand, within PS417_13270at 2913.624 kb on - strand, within PS417_13270at 2913.624 kb on - strand, within PS417_13270at 2913.730 kb on - strand, within PS417_13270at 2913.750 kb on + strand, within PS417_13270at 2913.751 kb on - strandat 2913.936 kb on - strand, within PS417_13270at 2914.042 kb on + strand, within PS417_13270at 2914.043 kb on - strand, within PS417_13270at 2914.358 kb on - strandat 2914.358 kb on - strandat 2914.361 kb on + strandat 2914.361 kb on + strandat 2914.361 kb on + strandat 2914.362 kb on - strandat 2914.362 kb on - strandat 2914.364 kb on + strandat 2914.408 kb on - strandat 2914.501 kb on + strandat 2914.532 kb on - strandat 2914.586 kb on - strandat 2914.685 kb on + strandat 2914.685 kb on + strandat 2914.918 kb on + strandat 2915.067 kb on + strand, within PS417_13275at 2915.198 kb on + strand, within PS417_13275at 2915.354 kb on + strand, within PS417_13275

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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2,912,862 - -0.0
2,913,196 + +0.4
2,913,196 + +0.2
2,913,197 - -0.9
2,913,623 + PS417_13270 0.12 -1.1
2,913,624 - PS417_13270 0.12 -0.1
2,913,624 - PS417_13270 0.12 -1.5
2,913,730 - PS417_13270 0.24 +0.0
2,913,750 + PS417_13270 0.26 -1.2
2,913,751 - -1.5
2,913,936 - PS417_13270 0.47 -0.4
2,914,042 + PS417_13270 0.59 -0.1
2,914,043 - PS417_13270 0.59 -0.6
2,914,358 - +0.1
2,914,358 - -0.2
2,914,361 + -0.6
2,914,361 + -0.7
2,914,361 + +0.3
2,914,362 - -0.4
2,914,362 - +0.1
2,914,364 + +0.1
2,914,408 - +0.0
2,914,501 + -0.5
2,914,532 - -0.3
2,914,586 - +0.9
2,914,685 + -0.2
2,914,685 + -1.3
2,914,918 + +0.3
2,915,067 + PS417_13275 0.22 -1.4
2,915,198 + PS417_13275 0.26 -0.2
2,915,354 + PS417_13275 0.31 -0.0

Or see this region's nucleotide sequence