Strain Fitness in Pseudomonas simiae WCS417 around PS417_12595

Experiment: Scopoletin 2 mM; solid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_12590 and PS417_12595 are separated by 287 nucleotidesPS417_12595 and PS417_12600 are separated by 3 nucleotides PS417_12590: PS417_12590 - RND transporter, at 2,741,033 to 2,742,175 _12590 PS417_12595: PS417_12595 - transcriptional regulator, at 2,742,463 to 2,743,164 _12595 PS417_12600: PS417_12600 - histidine kinase, at 2,743,168 to 2,744,469 _12600 Position (kb) 2742 2743 2744Strain fitness (log2 ratio) -1 0 1at 2742.276 kb on + strandat 2742.276 kb on + strandat 2742.277 kb on - strandat 2742.292 kb on + strandat 2742.292 kb on + strandat 2742.293 kb on - strandat 2742.293 kb on - strandat 2742.293 kb on - strandat 2742.293 kb on - strandat 2742.295 kb on - strandat 2742.361 kb on + strandat 2742.757 kb on + strand, within PS417_12595at 2742.940 kb on + strand, within PS417_12595at 2743.132 kb on + strandat 2743.228 kb on + strandat 2743.327 kb on + strand, within PS417_12600

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
remove
2,742,276 + -0.2
2,742,276 + -0.7
2,742,277 - +0.5
2,742,292 + -0.4
2,742,292 + -1.2
2,742,293 - +0.1
2,742,293 - +0.1
2,742,293 - -0.9
2,742,293 - -0.6
2,742,295 - +0.7
2,742,361 + -0.9
2,742,757 + PS417_12595 0.42 -1.0
2,742,940 + PS417_12595 0.68 -0.6
2,743,132 + -0.9
2,743,228 + -1.2
2,743,327 + PS417_12600 0.12 -0.4

Or see this region's nucleotide sequence