Strain Fitness in Pseudomonas simiae WCS417 around PS417_11720

Experiment: Scopoletin 2 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11715 and PS417_11720 are separated by 34 nucleotidesPS417_11720 and PS417_11725 are separated by 18 nucleotides PS417_11715: PS417_11715 - chromophore maturation protein PvdO, at 2,547,087 to 2,547,947 _11715 PS417_11720: PS417_11720 - class V aminotransferase, at 2,547,982 to 2,549,253 _11720 PS417_11725: PS417_11725 - peptidase M19, at 2,549,272 to 2,550,621 _11725 Position (kb) 2547 2548 2549 2550Strain fitness (log2 ratio) -1 0 1 2at 2546.996 kb on - strandat 2547.054 kb on + strandat 2547.086 kb on - strandat 2547.089 kb on - strandat 2547.208 kb on + strand, within PS417_11715at 2547.263 kb on - strand, within PS417_11715at 2547.296 kb on - strand, within PS417_11715at 2547.367 kb on + strandat 2547.385 kb on + strand, within PS417_11715at 2547.385 kb on + strand, within PS417_11715at 2547.385 kb on + strand, within PS417_11715at 2547.386 kb on - strand, within PS417_11715at 2547.472 kb on + strand, within PS417_11715at 2547.538 kb on + strand, within PS417_11715at 2547.674 kb on - strand, within PS417_11715at 2548.115 kb on + strand, within PS417_11720at 2548.557 kb on - strand, within PS417_11720at 2548.814 kb on + strand, within PS417_11720at 2548.815 kb on - strand, within PS417_11720at 2549.215 kb on + strandat 2549.216 kb on - strandat 2549.216 kb on - strandat 2550.033 kb on - strand, within PS417_11725at 2550.033 kb on - strand, within PS417_11725at 2550.033 kb on - strand, within PS417_11725at 2550.176 kb on + strand, within PS417_11725at 2550.210 kb on - strand, within PS417_11725at 2550.231 kb on - strand, within PS417_11725

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress
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2,546,996 - -1.0
2,547,054 + -0.1
2,547,086 - +0.0
2,547,089 - -0.1
2,547,208 + PS417_11715 0.14 -0.2
2,547,263 - PS417_11715 0.20 +0.5
2,547,296 - PS417_11715 0.24 +0.9
2,547,367 + -0.5
2,547,385 + PS417_11715 0.35 -0.6
2,547,385 + PS417_11715 0.35 +0.7
2,547,385 + PS417_11715 0.35 -0.1
2,547,386 - PS417_11715 0.35 -0.1
2,547,472 + PS417_11715 0.45 +1.8
2,547,538 + PS417_11715 0.52 -0.5
2,547,674 - PS417_11715 0.68 +1.0
2,548,115 + PS417_11720 0.10 -1.4
2,548,557 - PS417_11720 0.45 +0.0
2,548,814 + PS417_11720 0.65 -1.0
2,548,815 - PS417_11720 0.65 -0.7
2,549,215 + +0.4
2,549,216 - -0.6
2,549,216 - -0.2
2,550,033 - PS417_11725 0.56 -1.7
2,550,033 - PS417_11725 0.56 -0.3
2,550,033 - PS417_11725 0.56 +0.2
2,550,176 + PS417_11725 0.67 -0.3
2,550,210 - PS417_11725 0.69 +0.3
2,550,231 - PS417_11725 0.71 +0.3

Or see this region's nucleotide sequence