Experiment: Scopoletin 2 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09590 and PS417_09595 overlap by 1 nucleotides PS417_09595 and PS417_09600 are separated by 2 nucleotides
PS417_09590: PS417_09590 - membrane protein, at 2,076,269 to 2,077,678
_09590
PS417_09595: PS417_09595 - membrane protein, at 2,077,678 to 2,079,105
_09595
PS417_09600: PS417_09600 - glycosyl transferase family 1, at 2,079,108 to 2,080,211
_09600
Position (kb)
2077
2078
2079
2080 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2077.002 kb on - strand, within PS417_09590 at 2077.182 kb on + strand, within PS417_09590 at 2077.183 kb on - strand, within PS417_09590 at 2077.208 kb on + strand, within PS417_09590 at 2077.261 kb on + strand, within PS417_09590 at 2077.261 kb on + strand, within PS417_09590 at 2077.262 kb on - strand, within PS417_09590 at 2077.483 kb on - strand, within PS417_09590 at 2077.715 kb on - strand at 2077.826 kb on + strand, within PS417_09595 at 2077.827 kb on - strand, within PS417_09595 at 2077.827 kb on - strand, within PS417_09595 at 2077.994 kb on + strand, within PS417_09595 at 2077.994 kb on + strand, within PS417_09595 at 2077.995 kb on - strand, within PS417_09595 at 2077.995 kb on - strand, within PS417_09595 at 2078.000 kb on + strand, within PS417_09595 at 2078.000 kb on + strand, within PS417_09595 at 2078.001 kb on - strand at 2078.187 kb on - strand, within PS417_09595 at 2078.244 kb on - strand, within PS417_09595 at 2078.884 kb on - strand, within PS417_09595 at 2078.983 kb on + strand at 2078.983 kb on + strand at 2078.984 kb on - strand at 2079.376 kb on + strand, within PS417_09600 at 2079.377 kb on - strand, within PS417_09600 at 2079.809 kb on - strand at 2079.809 kb on - strand, within PS417_09600 at 2079.940 kb on + strand, within PS417_09600 at 2079.940 kb on + strand, within PS417_09600 at 2079.941 kb on - strand, within PS417_09600
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 2 mM; solid stress remove 2,077,002 - PS417_09590 0.52 -2.8 2,077,182 + PS417_09590 0.65 -1.6 2,077,183 - PS417_09590 0.65 -1.6 2,077,208 + PS417_09590 0.67 -2.0 2,077,261 + PS417_09590 0.70 +0.2 2,077,261 + PS417_09590 0.70 +1.1 2,077,262 - PS417_09590 0.70 -0.1 2,077,483 - PS417_09590 0.86 -0.7 2,077,715 - -0.7 2,077,826 + PS417_09595 0.10 -1.8 2,077,827 - PS417_09595 0.10 -0.3 2,077,827 - PS417_09595 0.10 -0.4 2,077,994 + PS417_09595 0.22 -1.7 2,077,994 + PS417_09595 0.22 -1.9 2,077,995 - PS417_09595 0.22 -1.6 2,077,995 - PS417_09595 0.22 -1.2 2,078,000 + PS417_09595 0.23 -0.4 2,078,000 + PS417_09595 0.23 -0.5 2,078,001 - -1.1 2,078,187 - PS417_09595 0.36 -0.1 2,078,244 - PS417_09595 0.40 -0.7 2,078,884 - PS417_09595 0.84 -0.7 2,078,983 + -0.3 2,078,983 + -1.1 2,078,984 - -1.0 2,079,376 + PS417_09600 0.24 -1.2 2,079,377 - PS417_09600 0.24 -1.6 2,079,809 - +0.4 2,079,809 - PS417_09600 0.63 -1.9 2,079,940 + PS417_09600 0.75 -1.5 2,079,940 + PS417_09600 0.75 -0.8 2,079,941 - PS417_09600 0.75 -1.5
Or see this region's nucleotide sequence