Strain Fitness in Pseudomonas simiae WCS417 around PS417_27665

Experiment: Scopoletin 1 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27660 and PS417_27665 are separated by 66 nucleotidesPS417_27665 and PS417_27670 are separated by 255 nucleotides PS417_27660: PS417_27660 - multidrug transporter, at 5,964,798 to 5,966,201 _27660 PS417_27665: PS417_27665 - diguanylate cyclase, at 5,966,268 to 5,967,932 _27665 PS417_27670: PS417_27670 - ATP-dependent DNA helicase Rep, at 5,968,188 to 5,970,197 _27670 Position (kb) 5966 5967 5968Strain fitness (log2 ratio) -2 -1 0 1 2at 5965.317 kb on + strand, within PS417_27660at 5965.317 kb on + strand, within PS417_27660at 5965.318 kb on - strand, within PS417_27660at 5965.318 kb on - strand, within PS417_27660at 5965.318 kb on - strand, within PS417_27660at 5965.434 kb on + strand, within PS417_27660at 5965.452 kb on - strand, within PS417_27660at 5965.452 kb on - strand, within PS417_27660at 5965.452 kb on - strand, within PS417_27660at 5965.456 kb on - strandat 5965.456 kb on - strand, within PS417_27660at 5965.503 kb on + strand, within PS417_27660at 5965.548 kb on + strand, within PS417_27660at 5966.002 kb on - strandat 5966.169 kb on + strandat 5966.170 kb on - strandat 5966.208 kb on + strandat 5966.308 kb on + strandat 5966.309 kb on - strandat 5967.642 kb on + strand, within PS417_27665at 5967.643 kb on - strand, within PS417_27665at 5967.643 kb on - strand, within PS417_27665at 5967.643 kb on - strand, within PS417_27665at 5967.643 kb on - strand, within PS417_27665at 5967.643 kb on - strand, within PS417_27665at 5967.709 kb on - strand, within PS417_27665at 5967.935 kb on + strandat 5967.935 kb on + strandat 5967.936 kb on - strandat 5967.936 kb on - strandat 5967.943 kb on + strandat 5967.976 kb on - strandat 5968.047 kb on + strandat 5968.090 kb on - strandat 5968.102 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 1 mM; solid stress
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5,965,317 + PS417_27660 0.37 -0.5
5,965,317 + PS417_27660 0.37 -2.1
5,965,318 - PS417_27660 0.37 -0.4
5,965,318 - PS417_27660 0.37 -0.2
5,965,318 - PS417_27660 0.37 +0.1
5,965,434 + PS417_27660 0.45 -0.3
5,965,452 - PS417_27660 0.47 +0.4
5,965,452 - PS417_27660 0.47 -0.3
5,965,452 - PS417_27660 0.47 -0.0
5,965,456 - +1.9
5,965,456 - PS417_27660 0.47 -0.2
5,965,503 + PS417_27660 0.50 -0.2
5,965,548 + PS417_27660 0.53 -1.0
5,966,002 - -0.4
5,966,169 + +0.1
5,966,170 - +0.0
5,966,208 + -0.4
5,966,308 + -0.7
5,966,309 - -1.4
5,967,642 + PS417_27665 0.83 -1.8
5,967,643 - PS417_27665 0.83 -0.4
5,967,643 - PS417_27665 0.83 -0.7
5,967,643 - PS417_27665 0.83 -0.9
5,967,643 - PS417_27665 0.83 -1.1
5,967,643 - PS417_27665 0.83 -1.5
5,967,709 - PS417_27665 0.87 -0.3
5,967,935 + -0.2
5,967,935 + -0.2
5,967,936 - -0.8
5,967,936 - -0.3
5,967,943 + +0.8
5,967,976 - +0.4
5,968,047 + -0.6
5,968,090 - +1.1
5,968,102 - -0.3

Or see this region's nucleotide sequence