Experiment: Scopoletin 1 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20180 and PS417_20185 overlap by 1 nucleotides PS417_20185 and PS417_20190 are separated by 21 nucleotides
PS417_20180: PS417_20180 - agmatinase, at 4,384,795 to 4,385,745
_20180
PS417_20185: PS417_20185 - ketosteroid isomerase, at 4,385,745 to 4,386,167
_20185
PS417_20190: PS417_20190 - nitrate reductase, at 4,386,189 to 4,387,700
_20190
Position (kb) 4385
4386
4387 Strain fitness (log2 ratio) -1
0
1 at 4385.005 kb on + strand, within PS417_20180 at 4385.005 kb on + strand, within PS417_20180 at 4385.077 kb on - strand, within PS417_20180 at 4385.265 kb on + strand, within PS417_20180 at 4385.265 kb on + strand, within PS417_20180 at 4385.266 kb on - strand, within PS417_20180 at 4385.266 kb on - strand, within PS417_20180 at 4385.312 kb on + strand, within PS417_20180 at 4385.372 kb on - strand, within PS417_20180 at 4385.501 kb on - strand, within PS417_20180 at 4385.501 kb on - strand, within PS417_20180 at 4385.501 kb on - strand, within PS417_20180 at 4385.856 kb on + strand, within PS417_20185 at 4385.856 kb on + strand, within PS417_20185 at 4385.857 kb on - strand, within PS417_20185 at 4385.893 kb on - strand, within PS417_20185 at 4386.194 kb on + strand at 4386.194 kb on + strand at 4386.197 kb on + strand at 4386.198 kb on - strand at 4386.209 kb on + strand at 4386.209 kb on + strand at 4386.209 kb on + strand at 4386.210 kb on - strand at 4386.216 kb on - strand at 4386.227 kb on - strand at 4386.267 kb on - strand at 4386.314 kb on + strand at 4386.401 kb on - strand, within PS417_20190 at 4386.401 kb on - strand, within PS417_20190 at 4386.903 kb on + strand, within PS417_20190 at 4386.903 kb on + strand, within PS417_20190 at 4386.903 kb on + strand, within PS417_20190 at 4386.904 kb on - strand, within PS417_20190 at 4386.928 kb on + strand, within PS417_20190 at 4387.029 kb on + strand, within PS417_20190 at 4387.047 kb on + strand, within PS417_20190 at 4387.047 kb on + strand, within PS417_20190 at 4387.047 kb on + strand, within PS417_20190 at 4387.047 kb on + strand, within PS417_20190 at 4387.047 kb on + strand, within PS417_20190 at 4387.048 kb on - strand, within PS417_20190 at 4387.048 kb on - strand, within PS417_20190 at 4387.048 kb on - strand, within PS417_20190 at 4387.048 kb on - strand, within PS417_20190 at 4387.136 kb on + strand, within PS417_20190 at 4387.137 kb on - strand, within PS417_20190 at 4387.147 kb on - strand, within PS417_20190
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 1 mM; solid stress remove 4,385,005 + PS417_20180 0.22 -0.3 4,385,005 + PS417_20180 0.22 -0.1 4,385,077 - PS417_20180 0.30 +0.0 4,385,265 + PS417_20180 0.49 +0.2 4,385,265 + PS417_20180 0.49 -1.0 4,385,266 - PS417_20180 0.50 +0.5 4,385,266 - PS417_20180 0.50 -1.3 4,385,312 + PS417_20180 0.54 +0.7 4,385,372 - PS417_20180 0.61 +0.4 4,385,501 - PS417_20180 0.74 -0.6 4,385,501 - PS417_20180 0.74 +0.5 4,385,501 - PS417_20180 0.74 -0.5 4,385,856 + PS417_20185 0.26 -1.1 4,385,856 + PS417_20185 0.26 -1.1 4,385,857 - PS417_20185 0.26 -0.2 4,385,893 - PS417_20185 0.35 +0.1 4,386,194 + +0.5 4,386,194 + -0.4 4,386,197 + +0.7 4,386,198 - -0.2 4,386,209 + +0.6 4,386,209 + -0.1 4,386,209 + -0.3 4,386,210 - +0.2 4,386,216 - -0.7 4,386,227 - -1.0 4,386,267 - +1.2 4,386,314 + +0.8 4,386,401 - PS417_20190 0.14 +0.4 4,386,401 - PS417_20190 0.14 +0.1 4,386,903 + PS417_20190 0.47 -0.5 4,386,903 + PS417_20190 0.47 +0.0 4,386,903 + PS417_20190 0.47 -0.7 4,386,904 - PS417_20190 0.47 +0.4 4,386,928 + PS417_20190 0.49 -0.4 4,387,029 + PS417_20190 0.56 -0.6 4,387,047 + PS417_20190 0.57 -0.2 4,387,047 + PS417_20190 0.57 -0.0 4,387,047 + PS417_20190 0.57 -0.4 4,387,047 + PS417_20190 0.57 -0.4 4,387,047 + PS417_20190 0.57 -0.5 4,387,048 - PS417_20190 0.57 +0.5 4,387,048 - PS417_20190 0.57 -0.0 4,387,048 - PS417_20190 0.57 -0.1 4,387,048 - PS417_20190 0.57 +0.2 4,387,136 + PS417_20190 0.63 +0.2 4,387,137 - PS417_20190 0.63 -0.3 4,387,147 - PS417_20190 0.63 -0.0
Or see this region's nucleotide sequence