Experiment: Scopoletin 1 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_15870 and PS417_15875 are separated by 116 nucleotides PS417_15875 and PS417_15880 are separated by 207 nucleotides PS417_15880 and PS417_15885 are separated by 2 nucleotides PS417_15885 and PS417_15890 are separated by 234 nucleotides
PS417_15870: PS417_15870 - histidine kinase, at 3,475,594 to 3,477,207
_15870
PS417_15875: PS417_15875 - LuxR family transcriptional regulator, at 3,477,324 to 3,477,926
_15875
PS417_15880: PS417_15880 - GNAT family acetyltransferase, at 3,478,134 to 3,478,625
_15880
PS417_15885: PS417_15885 - GCN5 family acetyltransferase, at 3,478,628 to 3,479,053
_15885
PS417_15890: PS417_15890 - RNA polymerase sigma factor, at 3,479,288 to 3,479,818
_15890
Position (kb)
3478
3479 Strain fitness (log2 ratio)
-1
0
1
2 at 3477.135 kb on - strand at 3477.282 kb on - strand at 3477.558 kb on - strand, within PS417_15875 at 3477.741 kb on + strand, within PS417_15875 at 3477.742 kb on - strand, within PS417_15875 at 3477.836 kb on + strand, within PS417_15875 at 3477.979 kb on - strand at 3478.096 kb on + strand at 3478.206 kb on + strand at 3478.206 kb on + strand, within PS417_15880 at 3478.540 kb on - strand, within PS417_15880 at 3478.560 kb on + strand, within PS417_15880 at 3478.560 kb on + strand, within PS417_15880 at 3478.560 kb on + strand at 3478.561 kb on - strand, within PS417_15880 at 3478.561 kb on - strand, within PS417_15880 at 3478.636 kb on - strand at 3478.636 kb on - strand at 3478.813 kb on - strand, within PS417_15885 at 3478.937 kb on + strand, within PS417_15885 at 3478.967 kb on + strand, within PS417_15885 at 3479.042 kb on - strand at 3479.116 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 1 mM; solid stress remove 3,477,135 - -0.0 3,477,282 - -0.3 3,477,558 - PS417_15875 0.39 -1.3 3,477,741 + PS417_15875 0.69 -0.3 3,477,742 - PS417_15875 0.69 -0.3 3,477,836 + PS417_15875 0.85 +0.0 3,477,979 - +0.5 3,478,096 + +0.2 3,478,206 + +2.6 3,478,206 + PS417_15880 0.15 -0.1 3,478,540 - PS417_15880 0.83 -0.1 3,478,560 + PS417_15880 0.87 -0.1 3,478,560 + PS417_15880 0.87 -0.9 3,478,560 + -0.2 3,478,561 - PS417_15880 0.87 -0.3 3,478,561 - PS417_15880 0.87 -1.3 3,478,636 - -0.4 3,478,636 - -0.4 3,478,813 - PS417_15885 0.43 -0.1 3,478,937 + PS417_15885 0.73 +0.5 3,478,967 + PS417_15885 0.80 +0.3 3,479,042 - +0.2 3,479,116 + +0.1
Or see this region's nucleotide sequence