Strain Fitness in Pseudomonas simiae WCS417 around PS417_04320

Experiment: Scopoletin 0.5 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04310 and PS417_04315 are separated by 1 nucleotidesPS417_04315 and PS417_04320 are separated by 33 nucleotidesPS417_04320 and PS417_04325 are separated by 88 nucleotidesPS417_04325 and PS417_04330 are separated by 16 nucleotides PS417_04310: PS417_04310 - hypothetical protein, at 966,995 to 967,423 _04310 PS417_04315: PS417_04315 - superoxide dismutase, at 967,425 to 968,036 _04315 PS417_04320: PS417_04320 - divalent cation transporter, at 968,070 to 968,963 _04320 PS417_04325: PS417_04325 - phosphocarrier protein HPr, at 969,052 to 969,324 _04325 PS417_04330: PS417_04330 - glmZ(sRNA)-inactivating NTPase, at 969,341 to 970,198 _04330 Position (kb) 968 969Strain fitness (log2 ratio) -2 -1 0 1 2at 967.073 kb on + strand, within PS417_04310at 967.073 kb on + strand, within PS417_04310at 967.074 kb on - strand, within PS417_04310at 967.424 kb on + strandat 967.425 kb on - strandat 967.431 kb on + strandat 967.431 kb on + strandat 967.432 kb on - strandat 967.432 kb on - strandat 967.432 kb on - strandat 967.433 kb on + strandat 967.433 kb on + strandat 967.458 kb on + strandat 967.478 kb on + strandat 967.507 kb on - strand, within PS417_04315at 967.507 kb on - strand, within PS417_04315at 967.507 kb on - strand, within PS417_04315at 967.527 kb on + strand, within PS417_04315at 967.527 kb on + strand, within PS417_04315at 967.935 kb on + strand, within PS417_04315at 967.936 kb on - strand, within PS417_04315at 967.936 kb on - strand, within PS417_04315at 967.945 kb on - strand, within PS417_04315at 967.966 kb on - strand, within PS417_04315at 967.980 kb on + strandat 967.981 kb on - strandat 967.988 kb on + strandat 968.017 kb on - strandat 968.059 kb on + strandat 968.059 kb on + strandat 968.059 kb on + strandat 968.059 kb on + strandat 968.138 kb on - strandat 968.148 kb on - strandat 968.432 kb on + strand, within PS417_04320at 968.432 kb on + strandat 968.432 kb on + strand, within PS417_04320at 968.433 kb on - strand, within PS417_04320at 968.454 kb on + strand, within PS417_04320at 968.534 kb on + strand, within PS417_04320at 968.961 kb on + strandat 968.979 kb on - strandat 968.979 kb on - strandat 969.042 kb on + strandat 969.042 kb on + strandat 969.043 kb on - strandat 969.071 kb on + strandat 969.071 kb on + strandat 969.072 kb on - strandat 969.072 kb on - strandat 969.075 kb on + strandat 969.075 kb on + strandat 969.075 kb on + strandat 969.076 kb on - strandat 969.346 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 0.5 mM; solid stress
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967,073 + PS417_04310 0.18 -0.8
967,073 + PS417_04310 0.18 +0.1
967,074 - PS417_04310 0.18 -0.3
967,424 + -0.2
967,425 - +0.4
967,431 + +0.3
967,431 + +0.4
967,432 - -0.6
967,432 - +0.2
967,432 - +0.9
967,433 + +0.4
967,433 + -0.0
967,458 + -0.4
967,478 + +0.0
967,507 - PS417_04315 0.13 +0.4
967,507 - PS417_04315 0.13 -2.0
967,507 - PS417_04315 0.13 -0.4
967,527 + PS417_04315 0.17 -0.5
967,527 + PS417_04315 0.17 -0.7
967,935 + PS417_04315 0.83 +0.8
967,936 - PS417_04315 0.83 +0.1
967,936 - PS417_04315 0.83 -0.8
967,945 - PS417_04315 0.85 -1.1
967,966 - PS417_04315 0.88 -0.2
967,980 + -0.3
967,981 - -0.0
967,988 + +0.9
968,017 - -1.3
968,059 + +1.8
968,059 + +0.2
968,059 + -0.4
968,059 + +0.3
968,138 - -0.2
968,148 - +0.1
968,432 + PS417_04320 0.40 -0.7
968,432 + +0.8
968,432 + PS417_04320 0.40 -1.6
968,433 - PS417_04320 0.41 -0.2
968,454 + PS417_04320 0.43 -0.5
968,534 + PS417_04320 0.52 -0.4
968,961 + -0.0
968,979 - +0.9
968,979 - +0.3
969,042 + +0.5
969,042 + +0.5
969,043 - -0.1
969,071 + +0.8
969,071 + -0.1
969,072 - +0.4
969,072 - -0.8
969,075 + -0.1
969,075 + +0.9
969,075 + -0.1
969,076 - +0.1
969,346 + -0.2

Or see this region's nucleotide sequence