Strain Fitness in Pseudomonas simiae WCS417 around PS417_02865

Experiment: Scopoletin 0.5 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02860 and PS417_02865 are separated by 152 nucleotidesPS417_02865 and PS417_02870 are separated by 115 nucleotides PS417_02860: PS417_02860 - TonB-dependent receptor, at 652,340 to 654,448 _02860 PS417_02865: PS417_02865 - peptidase, at 654,601 to 655,983 _02865 PS417_02870: PS417_02870 - TonB-dependent receptor, at 656,099 to 658,168 _02870 Position (kb) 654 655 656Strain fitness (log2 ratio) -1 0 1at 653.638 kb on - strand, within PS417_02860at 653.638 kb on - strand, within PS417_02860at 653.848 kb on - strand, within PS417_02860at 653.905 kb on - strand, within PS417_02860at 654.087 kb on + strand, within PS417_02860at 654.087 kb on + strand, within PS417_02860at 654.088 kb on - strand, within PS417_02860at 654.106 kb on - strand, within PS417_02860at 654.439 kb on - strandat 654.439 kb on - strandat 654.439 kb on - strandat 654.523 kb on - strandat 654.646 kb on + strandat 654.941 kb on + strand, within PS417_02865at 654.942 kb on - strand, within PS417_02865at 654.942 kb on - strand, within PS417_02865at 655.329 kb on - strand, within PS417_02865at 655.619 kb on + strand, within PS417_02865at 655.739 kb on + strandat 655.740 kb on - strand, within PS417_02865at 655.842 kb on - strand, within PS417_02865at 655.874 kb on + strandat 655.875 kb on - strandat 656.415 kb on + strand, within PS417_02870at 656.653 kb on - strand, within PS417_02870at 656.826 kb on + strand, within PS417_02870

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 0.5 mM; solid stress
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653,638 - PS417_02860 0.62 -0.0
653,638 - PS417_02860 0.62 -0.4
653,848 - PS417_02860 0.72 +0.4
653,905 - PS417_02860 0.74 +0.1
654,087 + PS417_02860 0.83 +0.7
654,087 + PS417_02860 0.83 +0.1
654,088 - PS417_02860 0.83 +0.3
654,106 - PS417_02860 0.84 -0.3
654,439 - +0.4
654,439 - -0.3
654,439 - -0.1
654,523 - -1.2
654,646 + +0.2
654,941 + PS417_02865 0.25 -1.5
654,942 - PS417_02865 0.25 -0.7
654,942 - PS417_02865 0.25 -1.0
655,329 - PS417_02865 0.53 +1.2
655,619 + PS417_02865 0.74 -1.3
655,739 + -0.3
655,740 - PS417_02865 0.82 -0.8
655,842 - PS417_02865 0.90 +0.2
655,874 + -0.6
655,875 - -0.3
656,415 + PS417_02870 0.15 -0.9
656,653 - PS417_02870 0.27 -0.2
656,826 + PS417_02870 0.35 -0.9

Or see this region's nucleotide sequence