Strain Fitness in Pseudomonas simiae WCS417 around PS417_26770

Experiment: Scopoletin 0.5 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26760 and PS417_26765 are separated by 19 nucleotidesPS417_26765 and PS417_26770 are separated by 144 nucleotidesPS417_26770 and PS417_26775 are separated by 9 nucleotidesPS417_26775 and PS417_26780 are separated by 52 nucleotides PS417_26760: PS417_26760 - oxidase, at 5,780,970 to 5,782,172 _26760 PS417_26765: PS417_26765 - membrane protein, at 5,782,192 to 5,782,515 _26765 PS417_26770: PS417_26770 - tRNA (guanine-N7)-methyltransferase, at 5,782,660 to 5,783,385 _26770 PS417_26775: PS417_26775 - thiazole synthase, at 5,783,395 to 5,784,189 _26775 PS417_26780: PS417_26780 - thiamine biosynthesis protein ThiS, at 5,784,242 to 5,784,442 _26780 Position (kb) 5782 5783 5784Strain fitness (log2 ratio) -2 -1 0 1 2at 5781.738 kb on + strand, within PS417_26760at 5781.845 kb on + strand, within PS417_26760at 5781.900 kb on + strand, within PS417_26760at 5782.088 kb on - strandat 5782.088 kb on - strandat 5782.180 kb on + strandat 5782.405 kb on + strand, within PS417_26765at 5782.446 kb on + strand, within PS417_26765at 5782.446 kb on + strand, within PS417_26765at 5782.446 kb on + strand, within PS417_26765at 5782.450 kb on + strand, within PS417_26765at 5782.565 kb on - strandat 5782.565 kb on - strandat 5782.820 kb on + strand, within PS417_26770at 5783.027 kb on + strand, within PS417_26770at 5783.028 kb on - strand, within PS417_26770at 5783.247 kb on - strand, within PS417_26770at 5783.397 kb on - strandat 5783.397 kb on - strandat 5783.397 kb on - strandat 5783.397 kb on - strandat 5783.466 kb on - strandat 5783.466 kb on - strandat 5783.771 kb on + strand, within PS417_26775at 5783.771 kb on + strandat 5783.772 kb on - strand, within PS417_26775at 5783.942 kb on + strand, within PS417_26775at 5783.973 kb on - strand, within PS417_26775at 5784.107 kb on + strand, within PS417_26775at 5784.141 kb on - strandat 5784.144 kb on + strandat 5784.144 kb on + strandat 5784.174 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 0.5 mM; solid stress
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5,781,738 + PS417_26760 0.64 -1.6
5,781,845 + PS417_26760 0.73 -0.5
5,781,900 + PS417_26760 0.77 -0.3
5,782,088 - +1.9
5,782,088 - -0.6
5,782,180 + +0.2
5,782,405 + PS417_26765 0.66 -0.2
5,782,446 + PS417_26765 0.78 +0.2
5,782,446 + PS417_26765 0.78 -0.6
5,782,446 + PS417_26765 0.78 -1.5
5,782,450 + PS417_26765 0.80 +0.4
5,782,565 - -0.2
5,782,565 - +0.3
5,782,820 + PS417_26770 0.22 +0.2
5,783,027 + PS417_26770 0.51 -0.5
5,783,028 - PS417_26770 0.51 -1.7
5,783,247 - PS417_26770 0.81 -0.0
5,783,397 - -0.4
5,783,397 - +0.2
5,783,397 - -0.1
5,783,397 - -0.1
5,783,466 - -2.4
5,783,466 - -1.9
5,783,771 + PS417_26775 0.47 -1.9
5,783,771 + +0.4
5,783,772 - PS417_26775 0.47 -2.0
5,783,942 + PS417_26775 0.69 -1.8
5,783,973 - PS417_26775 0.73 -1.0
5,784,107 + PS417_26775 0.90 -0.6
5,784,141 - -1.4
5,784,144 + -1.2
5,784,144 + -2.0
5,784,174 + -1.2

Or see this region's nucleotide sequence