Strain Fitness in Pseudomonas simiae WCS417 around PS417_21070

Experiment: Scopoletin 0.5 mM; solid stress

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_21065 and PS417_21070 are separated by 9 nucleotidesPS417_21070 and PS417_21075 are separated by 197 nucleotides PS417_21065: PS417_21065 - 3-methylitaconate isomerase, at 4,583,436 to 4,584,626 _21065 PS417_21070: PS417_21070 - aconitate hydratase, at 4,584,636 to 4,587,230 _21070 PS417_21075: PS417_21075 - methylcitrate synthase, at 4,587,428 to 4,588,555 _21075 Position (kb) 4584 4585 4586 4587 4588Strain fitness (log2 ratio) -1 0 1at 4583.764 kb on + strand, within PS417_21065at 4583.765 kb on - strand, within PS417_21065at 4584.590 kb on - strandat 4584.590 kb on - strandat 4584.601 kb on - strandat 4584.701 kb on - strandat 4584.824 kb on - strandat 4584.824 kb on - strandat 4585.216 kb on + strand, within PS417_21070at 4585.409 kb on - strand, within PS417_21070at 4585.487 kb on - strand, within PS417_21070at 4585.487 kb on - strand, within PS417_21070at 4586.315 kb on - strand, within PS417_21070

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 0.5 mM; solid stress
remove
4,583,764 + PS417_21065 0.28 -0.2
4,583,765 - PS417_21065 0.28 -0.1
4,584,590 - -0.2
4,584,590 - -1.7
4,584,601 - -0.2
4,584,701 - -0.6
4,584,824 - +0.1
4,584,824 - -0.3
4,585,216 + PS417_21070 0.22 -0.4
4,585,409 - PS417_21070 0.30 +0.4
4,585,487 - PS417_21070 0.33 -0.5
4,585,487 - PS417_21070 0.33 -0.4
4,586,315 - PS417_21070 0.65 -0.8

Or see this region's nucleotide sequence