Experiment: Scopoletin 0.5 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17830 and PS417_17835 overlap by 4 nucleotides PS417_17835 and PS417_17840 are separated by 5 nucleotides PS417_17840 and PS417_17845 are separated by 49 nucleotides PS417_17845 and PS417_17850 are separated by 15 nucleotides
PS417_17830: PS417_17830 - 4-hydroxyphenylacetate isomerase, at 3,893,873 to 3,894,538
_17830
PS417_17835: PS417_17835 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 3,894,535 to 3,895,305
_17835
PS417_17840: PS417_17840 - betaine-aldehyde dehydrogenase, at 3,895,311 to 3,896,771
_17840
PS417_17845: PS417_17845 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 3,896,821 to 3,897,678
_17845
PS417_17850: PS417_17850 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 3,897,694 to 3,898,107
_17850
Position (kb)
3895
3896
3897 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3894.515 kb on - strand at 3894.766 kb on + strand, within PS417_17835 at 3894.766 kb on + strand, within PS417_17835 at 3894.767 kb on - strand, within PS417_17835 at 3894.821 kb on - strand, within PS417_17835 at 3894.821 kb on - strand, within PS417_17835 at 3894.837 kb on - strand, within PS417_17835 at 3895.130 kb on - strand at 3895.368 kb on + strand at 3895.369 kb on - strand at 3895.369 kb on - strand at 3895.369 kb on - strand at 3895.369 kb on - strand at 3895.698 kb on + strand, within PS417_17840 at 3895.699 kb on - strand, within PS417_17840 at 3896.542 kb on - strand, within PS417_17840 at 3896.792 kb on - strand at 3896.805 kb on - strand at 3896.858 kb on + strand at 3896.870 kb on - strand at 3897.046 kb on + strand, within PS417_17845 at 3897.088 kb on + strand, within PS417_17845 at 3897.217 kb on + strand, within PS417_17845 at 3897.217 kb on + strand, within PS417_17845 at 3897.218 kb on - strand, within PS417_17845
Per-strain Table
Position Strand Gene LocusTag Fraction Scopoletin 0.5 mM; solid stress remove 3,894,515 - +0.2 3,894,766 + PS417_17835 0.30 +0.8 3,894,766 + PS417_17835 0.30 -0.5 3,894,767 - PS417_17835 0.30 +1.0 3,894,821 - PS417_17835 0.37 +0.1 3,894,821 - PS417_17835 0.37 +0.0 3,894,837 - PS417_17835 0.39 +0.4 3,895,130 - -0.4 3,895,368 + -2.0 3,895,369 - +1.0 3,895,369 - -1.3 3,895,369 - -0.3 3,895,369 - +0.6 3,895,698 + PS417_17840 0.26 -1.0 3,895,699 - PS417_17840 0.27 -0.2 3,896,542 - PS417_17840 0.84 -0.7 3,896,792 - +1.8 3,896,805 - -0.1 3,896,858 + -0.5 3,896,870 - +0.2 3,897,046 + PS417_17845 0.26 -0.3 3,897,088 + PS417_17845 0.31 -0.6 3,897,217 + PS417_17845 0.46 -0.6 3,897,217 + PS417_17845 0.46 +0.3 3,897,218 - PS417_17845 0.46 -0.1
Or see this region's nucleotide sequence