Strain Fitness in Pseudomonas simiae WCS417 around PS417_11615

Experiment: Scopoletin 0.5 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11605 and PS417_11610 overlap by 4 nucleotidesPS417_11610 and PS417_11615 are separated by 10 nucleotidesPS417_11615 and PS417_11620 are separated by 149 nucleotides PS417_11605: PS417_11605 - urea ABC transporter permease, at 2,496,289 to 2,497,452 _11605 PS417_11610: PS417_11610 - urea ABC transporter ATP-binding protein, at 2,497,449 to 2,498,207 _11610 PS417_11615: PS417_11615 - urea ABC transporter ATP-binding protein, at 2,498,218 to 2,498,907 _11615 PS417_11620: PS417_11620 - hypothetical protein, at 2,499,057 to 2,500,295 _11620 Position (kb) 2498 2499Strain fitness (log2 ratio) -1 0 1at 2497.234 kb on + strand, within PS417_11605at 2497.303 kb on + strand, within PS417_11605at 2497.802 kb on - strand, within PS417_11610at 2497.949 kb on - strand, within PS417_11610at 2498.456 kb on - strand, within PS417_11615at 2498.506 kb on - strand, within PS417_11615at 2498.931 kb on + strandat 2499.039 kb on - strandat 2499.039 kb on - strandat 2499.065 kb on + strandat 2499.066 kb on - strandat 2499.144 kb on + strandat 2499.144 kb on + strandat 2499.210 kb on - strand, within PS417_11620at 2499.290 kb on + strand, within PS417_11620at 2499.291 kb on - strand, within PS417_11620at 2499.299 kb on - strand, within PS417_11620at 2499.415 kb on - strand, within PS417_11620at 2499.418 kb on - strand, within PS417_11620at 2499.507 kb on + strand, within PS417_11620at 2499.524 kb on + strand, within PS417_11620at 2499.840 kb on + strand, within PS417_11620at 2499.841 kb on - strand, within PS417_11620at 2499.844 kb on - strand, within PS417_11620at 2499.888 kb on + strand, within PS417_11620

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 0.5 mM; solid stress
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2,497,234 + PS417_11605 0.81 +0.1
2,497,303 + PS417_11605 0.87 -1.4
2,497,802 - PS417_11610 0.47 -0.2
2,497,949 - PS417_11610 0.66 +0.6
2,498,456 - PS417_11615 0.34 -0.8
2,498,506 - PS417_11615 0.42 -0.9
2,498,931 + -0.3
2,499,039 - -1.0
2,499,039 - -0.7
2,499,065 + +0.0
2,499,066 - -0.1
2,499,144 + +0.5
2,499,144 + -1.3
2,499,210 - PS417_11620 0.12 +1.0
2,499,290 + PS417_11620 0.19 -0.9
2,499,291 - PS417_11620 0.19 -0.5
2,499,299 - PS417_11620 0.20 -1.1
2,499,415 - PS417_11620 0.29 -0.1
2,499,418 - PS417_11620 0.29 +0.8
2,499,507 + PS417_11620 0.36 +0.1
2,499,524 + PS417_11620 0.38 +0.1
2,499,840 + PS417_11620 0.63 +0.0
2,499,841 - PS417_11620 0.63 -1.1
2,499,844 - PS417_11620 0.64 -0.3
2,499,888 + PS417_11620 0.67 +0.1

Or see this region's nucleotide sequence