Strain Fitness in Pseudomonas simiae WCS417 around PS417_05200

Experiment: Scopoletin 0.5 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05195 and PS417_05200 are separated by 154 nucleotidesPS417_05200 and PS417_05205 are separated by 51 nucleotides PS417_05195: PS417_05195 - GTPase Era, at 1,153,280 to 1,154,182 _05195 PS417_05200: PS417_05200 - DNA recombination protein RecO, at 1,154,337 to 1,155,026 _05200 PS417_05205: PS417_05205 - pyridoxine 5'-phosphate synthase, at 1,155,078 to 1,155,821 _05205 Position (kb) 1154 1155 1156Strain fitness (log2 ratio) -2 -1 0 1at 1154.247 kb on + strandat 1154.248 kb on - strandat 1154.248 kb on - strandat 1154.313 kb on - strandat 1154.370 kb on + strandat 1154.371 kb on - strandat 1154.449 kb on + strand, within PS417_05200at 1154.450 kb on - strand, within PS417_05200at 1154.450 kb on - strandat 1154.579 kb on + strand, within PS417_05200at 1154.608 kb on - strand, within PS417_05200at 1154.608 kb on - strand, within PS417_05200at 1154.820 kb on + strand, within PS417_05200at 1155.037 kb on + strandat 1155.037 kb on + strandat 1155.038 kb on - strandat 1155.038 kb on - strandat 1155.038 kb on - strandat 1155.820 kb on - strandat 1155.820 kb on - strandat 1155.835 kb on - strandat 1155.835 kb on - strandat 1155.904 kb on - strandat 1155.904 kb on - strandat 1155.904 kb on - strandat 1155.904 kb on - strandat 1155.904 kb on - strandat 1155.980 kb on + strandat 1155.981 kb on - strandat 1155.981 kb on - strandat 1155.985 kb on - strandat 1155.985 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Scopoletin 0.5 mM; solid stress
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1,154,247 + +0.2
1,154,248 - -0.2
1,154,248 - -0.1
1,154,313 - +0.1
1,154,370 + -1.3
1,154,371 - +0.4
1,154,449 + PS417_05200 0.16 -0.4
1,154,450 - PS417_05200 0.16 -0.5
1,154,450 - +0.5
1,154,579 + PS417_05200 0.35 -0.7
1,154,608 - PS417_05200 0.39 -2.3
1,154,608 - PS417_05200 0.39 -1.7
1,154,820 + PS417_05200 0.70 +1.1
1,155,037 + +0.5
1,155,037 + -0.2
1,155,038 - +0.2
1,155,038 - -0.2
1,155,038 - -1.1
1,155,820 - -0.6
1,155,820 - +0.0
1,155,835 - +0.2
1,155,835 - +1.2
1,155,904 - +0.5
1,155,904 - +0.8
1,155,904 - +0.8
1,155,904 - -0.3
1,155,904 - -0.2
1,155,980 + -0.3
1,155,981 - -0.0
1,155,981 - +0.9
1,155,985 - -0.1
1,155,985 - -0.1

Or see this region's nucleotide sequence