Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03820 and PS417_03825 overlap by 4 nucleotides PS417_03825 and PS417_03830 are separated by 130 nucleotides PS417_03830 and PS417_03835 are separated by 300 nucleotides PS417_03835 and PS417_03840 are separated by 10 nucleotides PS417_03840 and PS417_03845 are separated by 5 nucleotides PS417_03845 and PS417_03850 are separated by 94 nucleotides PS417_03850 and PS417_03855 are separated by 192 nucleotides
PS417_03820: PS417_03820 - ribosomal large subunit pseudouridine synthase D, at 861,582 to 862,544
_03820
PS417_03825: PS417_03825 - laccase, at 862,541 to 863,266
_03825
PS417_03830: PS417_03830 - protein disaggregation chaperone, at 863,397 to 865,961
_03830
PS417_03835: PS417_03835 - tRNA-Asn, at 866,262 to 866,337
_03835
PS417_03840: PS417_03840 - tRNA-Pro, at 866,348 to 866,424
_03840
PS417_03845: PS417_03845 - tRNA-Lys, at 866,430 to 866,505
_03845
PS417_03850: PS417_03850 - tRNA-Pro, at 866,600 to 866,676
_03850
PS417_03855: PS417_03855 - NADH dehydrogenase, at 866,869 to 868,167
_03855
Position (kb) 863
864
865
866 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 862.717 kb on + strand, within PS417_03825 at 862.718 kb on - strand, within PS417_03825 at 862.974 kb on + strand, within PS417_03825 at 862.974 kb on + strand, within PS417_03825 at 862.974 kb on + strand, within PS417_03825 at 862.975 kb on - strand, within PS417_03825 at 863.117 kb on + strand, within PS417_03825 at 863.117 kb on + strand, within PS417_03825 at 863.118 kb on - strand, within PS417_03825 at 863.118 kb on - strand, within PS417_03825 at 863.118 kb on - strand, within PS417_03825 at 863.118 kb on - strand, within PS417_03825 at 863.118 kb on - strand, within PS417_03825 at 863.118 kb on - strand, within PS417_03825 at 863.119 kb on + strand, within PS417_03825 at 863.119 kb on + strand, within PS417_03825 at 863.119 kb on + strand, within PS417_03825 at 863.120 kb on - strand, within PS417_03825 at 863.248 kb on + strand at 863.249 kb on - strand at 863.324 kb on + strand at 863.324 kb on + strand at 863.325 kb on - strand at 863.325 kb on - strand at 863.325 kb on - strand at 863.325 kb on - strand at 863.332 kb on + strand at 863.363 kb on + strand at 863.364 kb on - strand at 863.364 kb on - strand at 863.366 kb on - strand at 863.396 kb on - strand at 863.402 kb on + strand at 863.426 kb on - strand at 863.531 kb on + strand at 863.642 kb on + strand at 863.642 kb on + strand at 863.642 kb on + strand at 863.642 kb on + strand at 863.643 kb on - strand at 863.643 kb on - strand at 863.643 kb on - strand at 863.882 kb on + strand, within PS417_03830 at 863.886 kb on + strand, within PS417_03830 at 863.886 kb on + strand, within PS417_03830 at 863.887 kb on - strand, within PS417_03830 at 864.093 kb on - strand, within PS417_03830 at 864.336 kb on - strand, within PS417_03830 at 864.360 kb on + strand, within PS417_03830 at 864.361 kb on - strand, within PS417_03830 at 864.465 kb on + strand, within PS417_03830 at 864.535 kb on - strand, within PS417_03830 at 864.760 kb on - strand, within PS417_03830 at 864.887 kb on + strand, within PS417_03830 at 864.887 kb on + strand, within PS417_03830 at 864.887 kb on + strand, within PS417_03830 at 864.904 kb on - strand, within PS417_03830 at 864.989 kb on - strand, within PS417_03830 at 865.353 kb on + strand, within PS417_03830 at 865.353 kb on + strand, within PS417_03830 at 865.354 kb on - strand, within PS417_03830 at 865.354 kb on - strand, within PS417_03830 at 865.377 kb on + strand, within PS417_03830 at 865.772 kb on - strand at 865.807 kb on + strand at 865.813 kb on - strand at 865.825 kb on - strand at 865.825 kb on - strand at 865.980 kb on + strand at 866.677 kb on + strand at 866.843 kb on - strand at 866.852 kb on + strand at 866.852 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 862,717 + PS417_03825 0.24 -0.4 862,718 - PS417_03825 0.24 +0.1 862,974 + PS417_03825 0.60 +0.1 862,974 + PS417_03825 0.60 +0.0 862,974 + PS417_03825 0.60 -0.9 862,975 - PS417_03825 0.60 -0.0 863,117 + PS417_03825 0.79 -0.5 863,117 + PS417_03825 0.79 +2.3 863,118 - PS417_03825 0.79 +1.9 863,118 - PS417_03825 0.79 -0.5 863,118 - PS417_03825 0.79 +0.2 863,118 - PS417_03825 0.79 -0.1 863,118 - PS417_03825 0.79 -0.4 863,118 - PS417_03825 0.79 -0.3 863,119 + PS417_03825 0.80 -1.1 863,119 + PS417_03825 0.80 -0.5 863,119 + PS417_03825 0.80 +1.2 863,120 - PS417_03825 0.80 +0.7 863,248 + +0.0 863,249 - -1.0 863,324 + +0.5 863,324 + +0.7 863,325 - -2.3 863,325 - -2.8 863,325 - -3.0 863,325 - -1.4 863,332 + +1.4 863,363 + -0.2 863,364 - -3.0 863,364 - -2.0 863,366 - -2.2 863,396 - -3.3 863,402 + -2.1 863,426 - -0.6 863,531 + -1.5 863,642 + -2.6 863,642 + -2.7 863,642 + -1.4 863,642 + -4.0 863,643 - -4.2 863,643 - -3.7 863,643 - -3.9 863,882 + PS417_03830 0.19 -2.0 863,886 + PS417_03830 0.19 -0.5 863,886 + PS417_03830 0.19 -3.7 863,887 - PS417_03830 0.19 -4.2 864,093 - PS417_03830 0.27 -2.9 864,336 - PS417_03830 0.37 -3.5 864,360 + PS417_03830 0.38 +2.4 864,361 - PS417_03830 0.38 -3.6 864,465 + PS417_03830 0.42 -2.9 864,535 - PS417_03830 0.44 -2.5 864,760 - PS417_03830 0.53 -5.0 864,887 + PS417_03830 0.58 -0.1 864,887 + PS417_03830 0.58 -4.5 864,887 + PS417_03830 0.58 -1.7 864,904 - PS417_03830 0.59 -4.1 864,989 - PS417_03830 0.62 -2.8 865,353 + PS417_03830 0.76 -2.2 865,353 + PS417_03830 0.76 -2.5 865,354 - PS417_03830 0.76 -0.8 865,354 - PS417_03830 0.76 -2.9 865,377 + PS417_03830 0.77 -3.8 865,772 - -4.2 865,807 + -1.8 865,813 - -2.8 865,825 - -2.9 865,825 - -1.2 865,980 + -0.6 866,677 + -0.2 866,843 - -1.6 866,852 + -2.7 866,852 + -0.1
Or see this region's nucleotide sequence