Strain Fitness in Pseudomonas simiae WCS417 around PS417_03625

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03615 and PS417_03620 overlap by 8 nucleotidesPS417_03620 and PS417_03625 are separated by 112 nucleotidesPS417_03625 and PS417_03630 are separated by 136 nucleotidesPS417_03630 and PS417_03635 are separated by 137 nucleotidesPS417_03635 and PS417_03640 overlap by 8 nucleotides PS417_03615: PS417_03615 - molybdopterin-synthase adenylyltransferase, at 821,932 to 822,687 _03615 PS417_03620: PS417_03620 - glutamate racemase, at 822,680 to 823,474 _03620 PS417_03625: PS417_03625 - lipid A 3-O-deacylase, at 823,587 to 824,105 _03625 PS417_03630: PS417_03630 - hypothetical protein, at 824,242 to 824,463 _03630 PS417_03635: PS417_03635 - membrane protein, at 824,601 to 825,080 _03635 PS417_03640: PS417_03640 - cyclopropane-fatty-acyl-phospholipid synthase, at 825,073 to 826,344 _03640 Position (kb) 823 824 825Strain fitness (log2 ratio) -3 -2 -1 0 1at 823.435 kb on - strandat 823.531 kb on + strandat 823.531 kb on + strandat 823.532 kb on - strandat 823.532 kb on - strandat 823.541 kb on + strandat 823.549 kb on - strandat 823.549 kb on - strandat 823.560 kb on + strandat 823.560 kb on + strandat 823.560 kb on + strandat 823.560 kb on + strandat 823.734 kb on - strand, within PS417_03625at 823.795 kb on - strand, within PS417_03625at 823.795 kb on - strand, within PS417_03625at 823.884 kb on + strand, within PS417_03625at 823.884 kb on + strand, within PS417_03625at 823.884 kb on + strand, within PS417_03625at 823.885 kb on - strand, within PS417_03625at 823.885 kb on - strand, within PS417_03625at 823.885 kb on - strand, within PS417_03625at 823.886 kb on + strand, within PS417_03625at 823.886 kb on + strand, within PS417_03625at 823.886 kb on + strand, within PS417_03625at 824.076 kb on + strandat 824.076 kb on + strandat 824.077 kb on - strandat 824.088 kb on + strandat 824.089 kb on - strandat 824.089 kb on - strandat 824.104 kb on - strandat 824.170 kb on + strandat 824.185 kb on + strandat 824.186 kb on - strandat 824.221 kb on - strandat 824.340 kb on + strand, within PS417_03630at 824.340 kb on + strand, within PS417_03630at 824.341 kb on - strand, within PS417_03630at 824.341 kb on - strand, within PS417_03630at 824.428 kb on - strand, within PS417_03630at 824.429 kb on + strand, within PS417_03630at 824.560 kb on - strandat 824.560 kb on - strandat 824.575 kb on + strandat 824.576 kb on - strandat 824.625 kb on + strandat 824.625 kb on + strandat 824.911 kb on - strand, within PS417_03635at 824.959 kb on - strand, within PS417_03635at 825.075 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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823,435 - -3.7
823,531 + -2.2
823,531 + -0.5
823,532 - -2.1
823,532 - -0.2
823,541 + +0.5
823,549 - -1.1
823,549 - -1.6
823,560 + +1.1
823,560 + +0.8
823,560 + -1.5
823,560 + +0.2
823,734 - PS417_03625 0.28 -3.7
823,795 - PS417_03625 0.40 -2.8
823,795 - PS417_03625 0.40 -1.1
823,884 + PS417_03625 0.57 -1.3
823,884 + PS417_03625 0.57 -3.1
823,884 + PS417_03625 0.57 -2.5
823,885 - PS417_03625 0.57 -1.7
823,885 - PS417_03625 0.57 -3.1
823,885 - PS417_03625 0.57 -3.3
823,886 + PS417_03625 0.58 -2.6
823,886 + PS417_03625 0.58 -3.3
823,886 + PS417_03625 0.58 -3.5
824,076 + -2.0
824,076 + -2.8
824,077 - -1.6
824,088 + -1.7
824,089 - -2.3
824,089 - -2.5
824,104 - +0.4
824,170 + -0.8
824,185 + -0.5
824,186 - -0.4
824,221 - +1.2
824,340 + PS417_03630 0.44 +0.7
824,340 + PS417_03630 0.44 -0.2
824,341 - PS417_03630 0.45 +1.3
824,341 - PS417_03630 0.45 -0.8
824,428 - PS417_03630 0.84 +0.3
824,429 + PS417_03630 0.84 +0.6
824,560 - +0.9
824,560 - -0.4
824,575 + +0.3
824,576 - +0.5
824,625 + -0.2
824,625 + -0.3
824,911 - PS417_03635 0.65 +0.7
824,959 - PS417_03635 0.75 +1.4
825,075 - -0.4

Or see this region's nucleotide sequence