Strain Fitness in Pseudomonas simiae WCS417 around PS417_03275

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03265 and PS417_03270 overlap by 14 nucleotidesPS417_03270 and PS417_03275 overlap by 8 nucleotidesPS417_03275 and PS417_03280 are separated by 61 nucleotides PS417_03265: PS417_03265 - paraquat-inducible protein A, at 747,756 to 748,415 _03265 PS417_03270: PS417_03270 - paraquat-inducible protein A, at 748,402 to 749,025 _03270 PS417_03275: PS417_03275 - mammalian cell entry protein, at 749,018 to 751,321 _03275 PS417_03280: PS417_03280 - chromosome partitioning protein ParA, at 751,383 to 754,223 _03280 Position (kb) 749 750 751 752Strain fitness (log2 ratio) -1 0 1 2at 748.087 kb on + strand, within PS417_03265at 748.176 kb on + strand, within PS417_03265at 748.177 kb on - strand, within PS417_03265at 748.200 kb on + strand, within PS417_03265at 748.201 kb on - strand, within PS417_03265at 748.201 kb on - strand, within PS417_03265at 748.324 kb on + strand, within PS417_03265at 748.711 kb on - strand, within PS417_03270at 748.711 kb on - strand, within PS417_03270at 748.728 kb on + strand, within PS417_03270at 748.728 kb on + strand, within PS417_03270at 748.729 kb on - strand, within PS417_03270at 748.742 kb on + strand, within PS417_03270at 748.743 kb on - strand, within PS417_03270at 748.808 kb on - strand, within PS417_03270at 748.996 kb on - strandat 749.038 kb on + strandat 749.213 kb on - strandat 749.399 kb on + strand, within PS417_03275at 749.399 kb on + strand, within PS417_03275at 749.400 kb on - strand, within PS417_03275at 749.400 kb on - strand, within PS417_03275at 749.400 kb on - strand, within PS417_03275at 749.400 kb on - strand, within PS417_03275at 749.400 kb on - strand, within PS417_03275at 749.549 kb on + strand, within PS417_03275at 749.549 kb on + strand, within PS417_03275at 749.550 kb on - strand, within PS417_03275at 749.582 kb on + strand, within PS417_03275at 749.582 kb on + strand, within PS417_03275at 749.583 kb on - strand, within PS417_03275at 749.583 kb on - strand, within PS417_03275at 749.583 kb on - strand, within PS417_03275at 749.624 kb on + strand, within PS417_03275at 749.624 kb on + strand, within PS417_03275at 749.624 kb on + strand, within PS417_03275at 749.625 kb on - strand, within PS417_03275at 749.716 kb on - strand, within PS417_03275at 749.921 kb on + strand, within PS417_03275at 749.921 kb on + strand, within PS417_03275at 749.922 kb on - strand, within PS417_03275at 749.922 kb on - strand, within PS417_03275at 750.021 kb on - strand, within PS417_03275at 750.021 kb on - strand, within PS417_03275at 750.021 kb on - strand, within PS417_03275at 750.021 kb on - strand, within PS417_03275at 750.110 kb on + strand, within PS417_03275at 750.110 kb on + strand, within PS417_03275at 750.110 kb on + strand, within PS417_03275at 750.267 kb on - strand, within PS417_03275at 750.299 kb on + strand, within PS417_03275at 750.630 kb on + strand, within PS417_03275at 750.656 kb on - strand, within PS417_03275at 750.713 kb on - strand, within PS417_03275at 750.796 kb on + strand, within PS417_03275at 750.824 kb on + strand, within PS417_03275at 750.825 kb on - strand, within PS417_03275at 750.980 kb on + strand, within PS417_03275at 751.070 kb on + strand, within PS417_03275at 751.070 kb on + strand, within PS417_03275at 751.071 kb on - strand, within PS417_03275at 751.457 kb on - strandat 751.457 kb on - strandat 751.480 kb on + strandat 751.480 kb on + strandat 751.480 kb on + strandat 751.481 kb on - strandat 751.639 kb on + strandat 751.643 kb on - strandat 751.643 kb on - strandat 751.696 kb on + strand, within PS417_03280at 751.696 kb on + strand, within PS417_03280at 751.696 kb on + strand, within PS417_03280at 751.697 kb on - strand, within PS417_03280at 751.697 kb on - strand, within PS417_03280at 751.697 kb on - strand, within PS417_03280at 751.865 kb on - strand, within PS417_03280at 751.976 kb on + strand, within PS417_03280at 751.977 kb on - strand, within PS417_03280at 752.106 kb on - strand, within PS417_03280at 752.189 kb on - strand, within PS417_03280at 752.189 kb on - strand, within PS417_03280at 752.262 kb on + strand, within PS417_03280at 752.272 kb on + strandat 752.272 kb on + strand, within PS417_03280at 752.272 kb on + strand, within PS417_03280at 752.273 kb on - strand, within PS417_03280at 752.273 kb on - strand, within PS417_03280

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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748,087 + PS417_03265 0.50 +0.4
748,176 + PS417_03265 0.64 +0.2
748,177 - PS417_03265 0.64 -0.2
748,200 + PS417_03265 0.67 +0.6
748,201 - PS417_03265 0.67 -0.4
748,201 - PS417_03265 0.67 -1.6
748,324 + PS417_03265 0.86 +0.2
748,711 - PS417_03270 0.50 -0.8
748,711 - PS417_03270 0.50 -0.8
748,728 + PS417_03270 0.52 +0.3
748,728 + PS417_03270 0.52 -0.1
748,729 - PS417_03270 0.52 -0.2
748,742 + PS417_03270 0.54 -1.2
748,743 - PS417_03270 0.55 -0.5
748,808 - PS417_03270 0.65 +0.4
748,996 - -0.1
749,038 + -1.2
749,213 - +1.1
749,399 + PS417_03275 0.17 -0.2
749,399 + PS417_03275 0.17 -0.5
749,400 - PS417_03275 0.17 +0.0
749,400 - PS417_03275 0.17 +0.5
749,400 - PS417_03275 0.17 -0.4
749,400 - PS417_03275 0.17 +0.0
749,400 - PS417_03275 0.17 -0.2
749,549 + PS417_03275 0.23 -0.0
749,549 + PS417_03275 0.23 -0.0
749,550 - PS417_03275 0.23 +0.7
749,582 + PS417_03275 0.24 +0.8
749,582 + PS417_03275 0.24 -1.1
749,583 - PS417_03275 0.25 -0.0
749,583 - PS417_03275 0.25 -0.3
749,583 - PS417_03275 0.25 +0.5
749,624 + PS417_03275 0.26 -0.2
749,624 + PS417_03275 0.26 -0.5
749,624 + PS417_03275 0.26 -0.2
749,625 - PS417_03275 0.26 +0.4
749,716 - PS417_03275 0.30 -0.9
749,921 + PS417_03275 0.39 -0.3
749,921 + PS417_03275 0.39 +1.8
749,922 - PS417_03275 0.39 +0.3
749,922 - PS417_03275 0.39 -0.5
750,021 - PS417_03275 0.44 -0.3
750,021 - PS417_03275 0.44 -0.1
750,021 - PS417_03275 0.44 -0.1
750,021 - PS417_03275 0.44 +0.5
750,110 + PS417_03275 0.47 -0.7
750,110 + PS417_03275 0.47 -0.3
750,110 + PS417_03275 0.47 -1.5
750,267 - PS417_03275 0.54 -0.6
750,299 + PS417_03275 0.56 +0.1
750,630 + PS417_03275 0.70 +1.8
750,656 - PS417_03275 0.71 -0.9
750,713 - PS417_03275 0.74 +0.4
750,796 + PS417_03275 0.77 -0.5
750,824 + PS417_03275 0.78 -0.6
750,825 - PS417_03275 0.78 +0.1
750,980 + PS417_03275 0.85 +0.1
751,070 + PS417_03275 0.89 -0.8
751,070 + PS417_03275 0.89 +1.2
751,071 - PS417_03275 0.89 -1.6
751,457 - -1.2
751,457 - +0.6
751,480 + +0.8
751,480 + -0.2
751,480 + +1.1
751,481 - -0.8
751,639 + -0.4
751,643 - -0.6
751,643 - -0.6
751,696 + PS417_03280 0.11 -0.6
751,696 + PS417_03280 0.11 -0.3
751,696 + PS417_03280 0.11 -0.5
751,697 - PS417_03280 0.11 +0.2
751,697 - PS417_03280 0.11 -1.1
751,697 - PS417_03280 0.11 -0.3
751,865 - PS417_03280 0.17 -1.1
751,976 + PS417_03280 0.21 -1.0
751,977 - PS417_03280 0.21 +0.1
752,106 - PS417_03280 0.25 +0.0
752,189 - PS417_03280 0.28 +0.1
752,189 - PS417_03280 0.28 -0.9
752,262 + PS417_03280 0.31 +0.4
752,272 + +0.4
752,272 + PS417_03280 0.31 -1.4
752,272 + PS417_03280 0.31 -0.7
752,273 - PS417_03280 0.31 -1.0
752,273 - PS417_03280 0.31 -0.4

Or see this region's nucleotide sequence