Strain Fitness in Pseudomonas simiae WCS417 around PS417_03270

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03260 and PS417_03265 are separated by 158 nucleotidesPS417_03265 and PS417_03270 overlap by 14 nucleotidesPS417_03270 and PS417_03275 overlap by 8 nucleotides PS417_03260: PS417_03260 - 5S ribosomal RNA, at 747,482 to 747,597 _03260 PS417_03265: PS417_03265 - paraquat-inducible protein A, at 747,756 to 748,415 _03265 PS417_03270: PS417_03270 - paraquat-inducible protein A, at 748,402 to 749,025 _03270 PS417_03275: PS417_03275 - mammalian cell entry protein, at 749,018 to 751,321 _03275 Position (kb) 748 749 750Strain fitness (log2 ratio) -2 -1 0 1 2at 747.582 kb on + strand, within PS417_03260at 747.582 kb on + strand, within PS417_03260at 747.694 kb on + strandat 747.694 kb on + strandat 747.713 kb on + strandat 747.713 kb on + strandat 747.714 kb on - strandat 747.714 kb on - strandat 747.714 kb on - strandat 747.714 kb on - strandat 747.719 kb on - strandat 747.751 kb on + strandat 747.755 kb on + strandat 747.755 kb on + strandat 747.755 kb on + strandat 747.755 kb on + strandat 747.756 kb on - strandat 747.756 kb on - strandat 747.756 kb on - strandat 747.898 kb on + strand, within PS417_03265at 747.899 kb on - strand, within PS417_03265at 747.899 kb on - strand, within PS417_03265at 747.899 kb on - strand, within PS417_03265at 747.901 kb on - strand, within PS417_03265at 747.963 kb on + strand, within PS417_03265at 747.964 kb on - strand, within PS417_03265at 748.003 kb on + strand, within PS417_03265at 748.004 kb on - strand, within PS417_03265at 748.004 kb on - strand, within PS417_03265at 748.087 kb on + strand, within PS417_03265at 748.176 kb on + strand, within PS417_03265at 748.177 kb on - strand, within PS417_03265at 748.200 kb on + strand, within PS417_03265at 748.201 kb on - strand, within PS417_03265at 748.201 kb on - strand, within PS417_03265at 748.324 kb on + strand, within PS417_03265at 748.711 kb on - strand, within PS417_03270at 748.711 kb on - strand, within PS417_03270at 748.728 kb on + strand, within PS417_03270at 748.728 kb on + strand, within PS417_03270at 748.729 kb on - strand, within PS417_03270at 748.742 kb on + strand, within PS417_03270at 748.743 kb on - strand, within PS417_03270at 748.808 kb on - strand, within PS417_03270at 748.996 kb on - strandat 749.038 kb on + strandat 749.213 kb on - strandat 749.399 kb on + strand, within PS417_03275at 749.399 kb on + strand, within PS417_03275at 749.400 kb on - strand, within PS417_03275at 749.400 kb on - strand, within PS417_03275at 749.400 kb on - strand, within PS417_03275at 749.400 kb on - strand, within PS417_03275at 749.400 kb on - strand, within PS417_03275at 749.549 kb on + strand, within PS417_03275at 749.549 kb on + strand, within PS417_03275at 749.550 kb on - strand, within PS417_03275at 749.582 kb on + strand, within PS417_03275at 749.582 kb on + strand, within PS417_03275at 749.583 kb on - strand, within PS417_03275at 749.583 kb on - strand, within PS417_03275at 749.583 kb on - strand, within PS417_03275at 749.624 kb on + strand, within PS417_03275at 749.624 kb on + strand, within PS417_03275at 749.624 kb on + strand, within PS417_03275at 749.625 kb on - strand, within PS417_03275at 749.716 kb on - strand, within PS417_03275at 749.921 kb on + strand, within PS417_03275at 749.921 kb on + strand, within PS417_03275at 749.922 kb on - strand, within PS417_03275at 749.922 kb on - strand, within PS417_03275at 750.021 kb on - strand, within PS417_03275at 750.021 kb on - strand, within PS417_03275at 750.021 kb on - strand, within PS417_03275at 750.021 kb on - strand, within PS417_03275

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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747,582 + PS417_03260 0.86 -0.1
747,582 + PS417_03260 0.86 -1.8
747,694 + +0.1
747,694 + -0.2
747,713 + +0.2
747,713 + +1.0
747,714 - +0.6
747,714 - -0.9
747,714 - -0.1
747,714 - +0.4
747,719 - +0.1
747,751 + +0.5
747,755 + -0.9
747,755 + -0.7
747,755 + -0.9
747,755 + -0.4
747,756 - +0.1
747,756 - -0.3
747,756 - -0.4
747,898 + PS417_03265 0.22 +0.0
747,899 - PS417_03265 0.22 +0.2
747,899 - PS417_03265 0.22 -1.2
747,899 - PS417_03265 0.22 -1.3
747,901 - PS417_03265 0.22 +1.6
747,963 + PS417_03265 0.31 +0.9
747,964 - PS417_03265 0.32 -0.2
748,003 + PS417_03265 0.37 +1.4
748,004 - PS417_03265 0.38 +0.2
748,004 - PS417_03265 0.38 +1.5
748,087 + PS417_03265 0.50 +0.4
748,176 + PS417_03265 0.64 +0.2
748,177 - PS417_03265 0.64 -0.2
748,200 + PS417_03265 0.67 +0.6
748,201 - PS417_03265 0.67 -0.4
748,201 - PS417_03265 0.67 -1.6
748,324 + PS417_03265 0.86 +0.2
748,711 - PS417_03270 0.50 -0.8
748,711 - PS417_03270 0.50 -0.8
748,728 + PS417_03270 0.52 +0.3
748,728 + PS417_03270 0.52 -0.1
748,729 - PS417_03270 0.52 -0.2
748,742 + PS417_03270 0.54 -1.2
748,743 - PS417_03270 0.55 -0.5
748,808 - PS417_03270 0.65 +0.4
748,996 - -0.1
749,038 + -1.2
749,213 - +1.1
749,399 + PS417_03275 0.17 -0.2
749,399 + PS417_03275 0.17 -0.5
749,400 - PS417_03275 0.17 +0.0
749,400 - PS417_03275 0.17 +0.5
749,400 - PS417_03275 0.17 -0.4
749,400 - PS417_03275 0.17 +0.0
749,400 - PS417_03275 0.17 -0.2
749,549 + PS417_03275 0.23 -0.0
749,549 + PS417_03275 0.23 -0.0
749,550 - PS417_03275 0.23 +0.7
749,582 + PS417_03275 0.24 +0.8
749,582 + PS417_03275 0.24 -1.1
749,583 - PS417_03275 0.25 -0.0
749,583 - PS417_03275 0.25 -0.3
749,583 - PS417_03275 0.25 +0.5
749,624 + PS417_03275 0.26 -0.2
749,624 + PS417_03275 0.26 -0.5
749,624 + PS417_03275 0.26 -0.2
749,625 - PS417_03275 0.26 +0.4
749,716 - PS417_03275 0.30 -0.9
749,921 + PS417_03275 0.39 -0.3
749,921 + PS417_03275 0.39 +1.8
749,922 - PS417_03275 0.39 +0.3
749,922 - PS417_03275 0.39 -0.5
750,021 - PS417_03275 0.44 -0.3
750,021 - PS417_03275 0.44 -0.1
750,021 - PS417_03275 0.44 -0.1
750,021 - PS417_03275 0.44 +0.5

Or see this region's nucleotide sequence