Strain Fitness in Pseudomonas simiae WCS417 around PS417_27855

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27850 and PS417_27855 are separated by 6 nucleotidesPS417_27855 and PS417_27860 overlap by 4 nucleotidesPS417_27860 and PS417_27865 are separated by 221 nucleotides PS417_27850: PS417_27850 - biopolymer transporter ExbB, at 6,003,559 to 6,004,539 _27850 PS417_27855: PS417_27855 - biopolymer transporter ExbD, at 6,004,546 to 6,004,971 _27855 PS417_27860: PS417_27860 - energy transducer TonB, at 6,004,968 to 6,005,717 _27860 PS417_27865: PS417_27865 - LysR family transcriptional regulator, at 6,005,939 to 6,006,859 _27865 Position (kb) 6004 6005Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 6005.740 kb on + strandat 6005.741 kb on - strandat 6005.938 kb on + strandat 6005.955 kb on + strandat 6005.956 kb on - strandat 6005.956 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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6,005,740 + +0.6
6,005,741 - -0.2
6,005,938 + +0.3
6,005,955 + -5.4
6,005,956 - -3.8
6,005,956 - -0.7

Or see this region's nucleotide sequence