Strain Fitness in Pseudomonas simiae WCS417 around PS417_27850

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27845 and PS417_27850 are separated by 189 nucleotidesPS417_27850 and PS417_27855 are separated by 6 nucleotidesPS417_27855 and PS417_27860 overlap by 4 nucleotides PS417_27845: PS417_27845 - oxidoreductase, at 6,002,518 to 6,003,369 _27845 PS417_27850: PS417_27850 - biopolymer transporter ExbB, at 6,003,559 to 6,004,539 _27850 PS417_27855: PS417_27855 - biopolymer transporter ExbD, at 6,004,546 to 6,004,971 _27855 PS417_27860: PS417_27860 - energy transducer TonB, at 6,004,968 to 6,005,717 _27860 Position (kb) 6003 6004 6005Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6002.589 kb on + strandat 6002.724 kb on - strand, within PS417_27845at 6002.724 kb on - strand, within PS417_27845at 6002.732 kb on + strand, within PS417_27845at 6002.733 kb on - strand, within PS417_27845at 6002.752 kb on + strand, within PS417_27845at 6002.813 kb on + strand, within PS417_27845at 6002.814 kb on - strand, within PS417_27845at 6002.815 kb on + strand, within PS417_27845at 6002.815 kb on + strand, within PS417_27845at 6002.815 kb on + strand, within PS417_27845at 6002.815 kb on + strand, within PS417_27845at 6002.816 kb on - strand, within PS417_27845at 6002.816 kb on - strand, within PS417_27845at 6002.816 kb on - strand, within PS417_27845at 6002.816 kb on - strand, within PS417_27845at 6002.885 kb on + strand, within PS417_27845at 6002.886 kb on - strand, within PS417_27845at 6002.886 kb on - strand, within PS417_27845at 6003.044 kb on - strand, within PS417_27845at 6003.112 kb on + strand, within PS417_27845at 6003.112 kb on + strand, within PS417_27845at 6003.113 kb on - strand, within PS417_27845at 6003.113 kb on - strand, within PS417_27845at 6003.116 kb on + strand, within PS417_27845at 6003.325 kb on - strandat 6003.328 kb on + strandat 6003.328 kb on + strandat 6003.328 kb on + strandat 6003.328 kb on + strandat 6003.328 kb on + strandat 6003.328 kb on + strandat 6003.329 kb on - strandat 6003.329 kb on - strandat 6003.329 kb on - strandat 6003.397 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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6,002,589 + -0.2
6,002,724 - PS417_27845 0.24 +0.1
6,002,724 - PS417_27845 0.24 -0.3
6,002,732 + PS417_27845 0.25 -0.1
6,002,733 - PS417_27845 0.25 -0.7
6,002,752 + PS417_27845 0.27 +1.1
6,002,813 + PS417_27845 0.35 +1.0
6,002,814 - PS417_27845 0.35 -1.2
6,002,815 + PS417_27845 0.35 -0.4
6,002,815 + PS417_27845 0.35 -3.3
6,002,815 + PS417_27845 0.35 +0.5
6,002,815 + PS417_27845 0.35 -1.1
6,002,816 - PS417_27845 0.35 +0.6
6,002,816 - PS417_27845 0.35 +0.6
6,002,816 - PS417_27845 0.35 -0.4
6,002,816 - PS417_27845 0.35 -0.2
6,002,885 + PS417_27845 0.43 +0.3
6,002,886 - PS417_27845 0.43 +0.1
6,002,886 - PS417_27845 0.43 -0.2
6,003,044 - PS417_27845 0.62 +0.4
6,003,112 + PS417_27845 0.70 +0.2
6,003,112 + PS417_27845 0.70 +2.2
6,003,113 - PS417_27845 0.70 +0.2
6,003,113 - PS417_27845 0.70 +0.5
6,003,116 + PS417_27845 0.70 +0.1
6,003,325 - -0.7
6,003,328 + -0.6
6,003,328 + +0.3
6,003,328 + -0.7
6,003,328 + +0.5
6,003,328 + +0.4
6,003,328 + -0.5
6,003,329 - -0.0
6,003,329 - -0.5
6,003,329 - -0.9
6,003,397 - -0.6

Or see this region's nucleotide sequence