Strain Fitness in Pseudomonas simiae WCS417 around PS417_27265

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27260 and PS417_27265 are separated by 163 nucleotidesPS417_27265 and PS417_27270 are separated by 161 nucleotides PS417_27260: PS417_27260 - iron ABC transporter permease, at 5,883,768 to 5,885,384 _27260 PS417_27265: PS417_27265 - iron ABC transporter substrate-binding protein, at 5,885,548 to 5,886,552 _27265 PS417_27270: PS417_27270 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 5,886,714 to 5,887,937 _27270 Position (kb) 5885 5886 5887Strain fitness (log2 ratio) -1 0 1 2at 5884.630 kb on + strand, within PS417_27260at 5884.714 kb on + strand, within PS417_27260at 5884.714 kb on + strand, within PS417_27260at 5884.715 kb on - strand, within PS417_27260at 5884.715 kb on - strand, within PS417_27260at 5884.715 kb on - strand, within PS417_27260at 5884.823 kb on + strand, within PS417_27260at 5884.930 kb on + strand, within PS417_27260at 5884.936 kb on + strand, within PS417_27260at 5884.936 kb on + strand, within PS417_27260at 5884.937 kb on - strand, within PS417_27260at 5884.943 kb on - strand, within PS417_27260at 5885.086 kb on + strand, within PS417_27260at 5885.087 kb on - strand, within PS417_27260at 5885.285 kb on + strandat 5885.357 kb on - strandat 5885.549 kb on + strandat 5885.888 kb on + strand, within PS417_27265at 5885.889 kb on - strand, within PS417_27265at 5885.889 kb on - strand, within PS417_27265at 5885.889 kb on - strand, within PS417_27265at 5885.889 kb on - strand, within PS417_27265at 5885.891 kb on + strand, within PS417_27265at 5885.891 kb on + strand, within PS417_27265at 5885.891 kb on + strand, within PS417_27265at 5885.892 kb on - strand, within PS417_27265at 5885.892 kb on - strand, within PS417_27265at 5885.895 kb on + strand, within PS417_27265at 5885.895 kb on + strand, within PS417_27265at 5886.060 kb on - strand, within PS417_27265at 5886.122 kb on + strand, within PS417_27265at 5886.122 kb on + strand, within PS417_27265at 5886.122 kb on + strand, within PS417_27265at 5886.123 kb on - strand, within PS417_27265at 5886.201 kb on + strand, within PS417_27265at 5886.202 kb on - strandat 5886.202 kb on - strand, within PS417_27265at 5886.419 kb on + strand, within PS417_27265at 5886.419 kb on + strand, within PS417_27265at 5886.420 kb on - strand, within PS417_27265at 5886.420 kb on - strand, within PS417_27265at 5886.464 kb on + strandat 5886.765 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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5,884,630 + PS417_27260 0.53 -0.8
5,884,714 + PS417_27260 0.59 -1.6
5,884,714 + PS417_27260 0.59 -0.8
5,884,715 - PS417_27260 0.59 +0.0
5,884,715 - PS417_27260 0.59 -0.7
5,884,715 - PS417_27260 0.59 -0.9
5,884,823 + PS417_27260 0.65 -1.3
5,884,930 + PS417_27260 0.72 -0.5
5,884,936 + PS417_27260 0.72 -0.9
5,884,936 + PS417_27260 0.72 -0.0
5,884,937 - PS417_27260 0.72 +0.6
5,884,943 - PS417_27260 0.73 -0.4
5,885,086 + PS417_27260 0.82 -0.2
5,885,087 - PS417_27260 0.82 -0.9
5,885,285 + -1.0
5,885,357 - +0.2
5,885,549 + +0.5
5,885,888 + PS417_27265 0.34 +2.1
5,885,889 - PS417_27265 0.34 +0.4
5,885,889 - PS417_27265 0.34 -1.0
5,885,889 - PS417_27265 0.34 -0.3
5,885,889 - PS417_27265 0.34 -0.2
5,885,891 + PS417_27265 0.34 -0.2
5,885,891 + PS417_27265 0.34 +0.1
5,885,891 + PS417_27265 0.34 -0.2
5,885,892 - PS417_27265 0.34 +1.5
5,885,892 - PS417_27265 0.34 -0.4
5,885,895 + PS417_27265 0.35 -0.5
5,885,895 + PS417_27265 0.35 -1.4
5,886,060 - PS417_27265 0.51 +2.6
5,886,122 + PS417_27265 0.57 -1.7
5,886,122 + PS417_27265 0.57 +0.6
5,886,122 + PS417_27265 0.57 +0.3
5,886,123 - PS417_27265 0.57 -0.6
5,886,201 + PS417_27265 0.65 -0.7
5,886,202 - +1.9
5,886,202 - PS417_27265 0.65 -0.1
5,886,419 + PS417_27265 0.87 +0.4
5,886,419 + PS417_27265 0.87 -0.7
5,886,420 - PS417_27265 0.87 +2.0
5,886,420 - PS417_27265 0.87 +0.8
5,886,464 + +1.3
5,886,765 + -0.1

Or see this region's nucleotide sequence