Strain Fitness in Pseudomonas simiae WCS417 around PS417_27070

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27060 and PS417_27065 are separated by 131 nucleotidesPS417_27065 and PS417_27070 are separated by 20 nucleotidesPS417_27070 and PS417_27075 are separated by 99 nucleotidesPS417_27075 and PS417_27080 are separated by 30 nucleotides PS417_27060: PS417_27060 - 2OG-Fe(II) oxygenase, at 5,842,187 to 5,842,819 _27060 PS417_27065: PS417_27065 - hypothetical protein, at 5,842,951 to 5,843,703 _27065 PS417_27070: PS417_27070 - alpha/beta hydrolase, at 5,843,724 to 5,844,650 _27070 PS417_27075: PS417_27075 - thiol-disulfide isomerase, at 5,844,750 to 5,845,325 _27075 PS417_27080: PS417_27080 - penicillin amidase, at 5,845,356 to 5,847,710 _27080 Position (kb) 5843 5844 5845Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5842.774 kb on + strandat 5842.774 kb on + strandat 5842.774 kb on + strandat 5842.774 kb on + strandat 5842.775 kb on - strandat 5842.775 kb on - strandat 5842.775 kb on - strandat 5842.802 kb on + strandat 5842.803 kb on - strandat 5842.819 kb on + strandat 5842.819 kb on + strandat 5842.820 kb on - strandat 5842.822 kb on + strandat 5842.823 kb on - strandat 5842.823 kb on - strandat 5842.823 kb on - strandat 5842.828 kb on + strandat 5842.866 kb on + strandat 5842.874 kb on - strandat 5842.874 kb on - strandat 5842.927 kb on - strandat 5843.023 kb on + strandat 5843.024 kb on - strandat 5843.024 kb on - strandat 5843.120 kb on - strand, within PS417_27065at 5843.120 kb on - strand, within PS417_27065at 5843.554 kb on + strand, within PS417_27065at 5843.555 kb on - strand, within PS417_27065at 5843.555 kb on - strand, within PS417_27065at 5843.630 kb on - strandat 5843.632 kb on + strandat 5843.633 kb on - strandat 5843.633 kb on - strandat 5843.633 kb on - strandat 5843.718 kb on + strandat 5843.719 kb on - strandat 5843.725 kb on + strandat 5843.725 kb on + strandat 5843.725 kb on + strandat 5843.726 kb on - strandat 5843.726 kb on - strandat 5843.753 kb on + strandat 5843.753 kb on + strandat 5843.753 kb on + strandat 5843.753 kb on + strandat 5843.753 kb on + strandat 5843.754 kb on - strandat 5843.754 kb on - strandat 5843.754 kb on - strandat 5843.754 kb on - strandat 5843.754 kb on - strandat 5843.754 kb on - strandat 5843.759 kb on - strandat 5843.759 kb on - strandat 5844.091 kb on + strand, within PS417_27070at 5844.091 kb on + strand, within PS417_27070at 5844.092 kb on - strand, within PS417_27070at 5844.094 kb on + strand, within PS417_27070at 5844.094 kb on + strand, within PS417_27070at 5844.094 kb on + strand, within PS417_27070at 5844.095 kb on - strand, within PS417_27070at 5844.095 kb on - strand, within PS417_27070at 5844.095 kb on - strand, within PS417_27070at 5844.095 kb on - strand, within PS417_27070at 5844.095 kb on - strand, within PS417_27070at 5844.298 kb on + strand, within PS417_27070at 5844.431 kb on - strand, within PS417_27070at 5844.650 kb on + strandat 5844.651 kb on - strandat 5844.724 kb on + strandat 5844.725 kb on - strandat 5844.725 kb on - strandat 5844.725 kb on - strandat 5844.741 kb on + strandat 5844.742 kb on - strandat 5844.742 kb on - strandat 5844.826 kb on - strand, within PS417_27075at 5844.826 kb on - strand, within PS417_27075at 5845.035 kb on + strand, within PS417_27075at 5845.035 kb on + strand, within PS417_27075at 5845.188 kb on + strand, within PS417_27075at 5845.208 kb on + strand, within PS417_27075at 5845.209 kb on - strand, within PS417_27075at 5845.226 kb on + strand, within PS417_27075at 5845.267 kb on + strand, within PS417_27075at 5845.268 kb on - strandat 5845.419 kb on + strandat 5845.419 kb on + strandat 5845.419 kb on + strandat 5845.420 kb on - strandat 5845.425 kb on + strandat 5845.425 kb on + strandat 5845.560 kb on + strandat 5845.560 kb on + strandat 5845.560 kb on + strandat 5845.561 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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5,842,774 + -0.2
5,842,774 + -0.2
5,842,774 + +0.7
5,842,774 + +0.7
5,842,775 - -0.1
5,842,775 - -0.2
5,842,775 - -0.4
5,842,802 + +1.0
5,842,803 - +1.6
5,842,819 + +0.1
5,842,819 + -1.1
5,842,820 - -0.4
5,842,822 + -0.1
5,842,823 - -0.3
5,842,823 - -0.0
5,842,823 - +1.0
5,842,828 + -2.2
5,842,866 + -0.6
5,842,874 - +0.1
5,842,874 - -0.8
5,842,927 - -0.2
5,843,023 + -0.6
5,843,024 - -0.1
5,843,024 - -2.4
5,843,120 - PS417_27065 0.22 -0.8
5,843,120 - PS417_27065 0.22 -1.2
5,843,554 + PS417_27065 0.80 -0.4
5,843,555 - PS417_27065 0.80 -1.1
5,843,555 - PS417_27065 0.80 -0.4
5,843,630 - -0.4
5,843,632 + +0.3
5,843,633 - -0.8
5,843,633 - -0.8
5,843,633 - -1.3
5,843,718 + +1.0
5,843,719 - -0.2
5,843,725 + -0.9
5,843,725 + -0.3
5,843,725 + +0.0
5,843,726 - -1.2
5,843,726 - +0.3
5,843,753 + -0.2
5,843,753 + -0.6
5,843,753 + -1.2
5,843,753 + +1.5
5,843,753 + -0.1
5,843,754 - -1.1
5,843,754 - -1.0
5,843,754 - -0.5
5,843,754 - -0.7
5,843,754 - -0.7
5,843,754 - -0.3
5,843,759 - -1.3
5,843,759 - +1.3
5,844,091 + PS417_27070 0.40 -1.1
5,844,091 + PS417_27070 0.40 -1.4
5,844,092 - PS417_27070 0.40 +0.1
5,844,094 + PS417_27070 0.40 -1.1
5,844,094 + PS417_27070 0.40 -1.2
5,844,094 + PS417_27070 0.40 -3.9
5,844,095 - PS417_27070 0.40 -0.8
5,844,095 - PS417_27070 0.40 -1.3
5,844,095 - PS417_27070 0.40 -0.8
5,844,095 - PS417_27070 0.40 -1.4
5,844,095 - PS417_27070 0.40 -2.0
5,844,298 + PS417_27070 0.62 -1.2
5,844,431 - PS417_27070 0.76 +0.0
5,844,650 + -0.0
5,844,651 - -0.2
5,844,724 + -0.4
5,844,725 - -1.0
5,844,725 - +0.8
5,844,725 - +1.1
5,844,741 + +1.0
5,844,742 - +1.7
5,844,742 - +1.2
5,844,826 - PS417_27075 0.13 +1.3
5,844,826 - PS417_27075 0.13 +1.0
5,845,035 + PS417_27075 0.49 +1.6
5,845,035 + PS417_27075 0.49 +1.5
5,845,188 + PS417_27075 0.76 +0.7
5,845,208 + PS417_27075 0.80 -0.0
5,845,209 - PS417_27075 0.80 +1.7
5,845,226 + PS417_27075 0.83 +0.6
5,845,267 + PS417_27075 0.90 +0.5
5,845,268 - +0.1
5,845,419 + -0.1
5,845,419 + +0.3
5,845,419 + -1.2
5,845,420 - -0.7
5,845,425 + -0.0
5,845,425 + -0.1
5,845,560 + -1.7
5,845,560 + -1.3
5,845,560 + +0.1
5,845,561 - -0.2

Or see this region's nucleotide sequence