Strain Fitness in Pseudomonas simiae WCS417 around PS417_27015

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27010 and PS417_27015 are separated by 137 nucleotidesPS417_27015 and PS417_27020 are separated by 33 nucleotides PS417_27010: PS417_27010 - threonine dehydratase, at 5,832,441 to 5,833,955 _27010 PS417_27015: PS417_27015 - ribose 5-phosphate isomerase, at 5,834,093 to 5,834,764 _27015 PS417_27020: PS417_27020 - DNA-binding protein, at 5,834,798 to 5,835,712 _27020 Position (kb) 5834 5835Strain fitness (log2 ratio) -2 -1 0 1at 5833.153 kb on + strand, within PS417_27010at 5833.154 kb on - strand, within PS417_27010at 5833.213 kb on + strand, within PS417_27010at 5833.213 kb on + strand, within PS417_27010at 5833.213 kb on + strand, within PS417_27010at 5833.214 kb on - strand, within PS417_27010at 5833.214 kb on - strand, within PS417_27010at 5833.381 kb on + strandat 5833.381 kb on + strand, within PS417_27010at 5833.390 kb on + strand, within PS417_27010at 5833.391 kb on - strand, within PS417_27010at 5833.391 kb on - strand, within PS417_27010at 5833.391 kb on - strand, within PS417_27010at 5833.532 kb on - strand, within PS417_27010at 5833.532 kb on - strand, within PS417_27010at 5833.532 kb on - strand, within PS417_27010at 5833.532 kb on - strand, within PS417_27010at 5833.537 kb on + strand, within PS417_27010at 5833.538 kb on - strand, within PS417_27010at 5833.789 kb on + strand, within PS417_27010at 5833.790 kb on - strand, within PS417_27010at 5833.790 kb on - strand, within PS417_27010at 5833.942 kb on + strandat 5833.943 kb on - strandat 5834.048 kb on + strandat 5834.048 kb on + strandat 5834.050 kb on + strandat 5834.050 kb on + strandat 5834.050 kb on + strandat 5834.051 kb on - strandat 5834.051 kb on - strandat 5834.823 kb on + strandat 5834.823 kb on + strandat 5834.823 kb on + strandat 5834.823 kb on + strandat 5834.823 kb on + strandat 5834.824 kb on - strandat 5834.824 kb on - strandat 5834.824 kb on - strandat 5834.824 kb on - strandat 5834.824 kb on - strandat 5835.024 kb on + strand, within PS417_27020at 5835.096 kb on + strand, within PS417_27020at 5835.138 kb on + strand, within PS417_27020at 5835.139 kb on - strand, within PS417_27020at 5835.139 kb on - strand, within PS417_27020at 5835.195 kb on + strand, within PS417_27020at 5835.336 kb on + strand, within PS417_27020at 5835.336 kb on + strand, within PS417_27020at 5835.337 kb on - strand, within PS417_27020at 5835.395 kb on - strand, within PS417_27020at 5835.448 kb on + strand, within PS417_27020at 5835.483 kb on + strand, within PS417_27020at 5835.483 kb on + strand, within PS417_27020at 5835.483 kb on + strand, within PS417_27020at 5835.484 kb on - strand, within PS417_27020at 5835.522 kb on - strand, within PS417_27020at 5835.746 kb on + strandat 5835.747 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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5,833,153 + PS417_27010 0.47 +0.2
5,833,154 - PS417_27010 0.47 +0.4
5,833,213 + PS417_27010 0.51 -0.1
5,833,213 + PS417_27010 0.51 -0.1
5,833,213 + PS417_27010 0.51 +0.4
5,833,214 - PS417_27010 0.51 -0.1
5,833,214 - PS417_27010 0.51 +0.3
5,833,381 + +1.1
5,833,381 + PS417_27010 0.62 -0.2
5,833,390 + PS417_27010 0.63 -0.0
5,833,391 - PS417_27010 0.63 +0.5
5,833,391 - PS417_27010 0.63 -0.8
5,833,391 - PS417_27010 0.63 +1.7
5,833,532 - PS417_27010 0.72 +0.1
5,833,532 - PS417_27010 0.72 +0.8
5,833,532 - PS417_27010 0.72 -0.6
5,833,532 - PS417_27010 0.72 -0.3
5,833,537 + PS417_27010 0.72 -0.3
5,833,538 - PS417_27010 0.72 +0.6
5,833,789 + PS417_27010 0.89 +0.5
5,833,790 - PS417_27010 0.89 -0.1
5,833,790 - PS417_27010 0.89 -0.0
5,833,942 + +0.5
5,833,943 - +1.2
5,834,048 + -1.0
5,834,048 + -1.9
5,834,050 + +0.1
5,834,050 + +0.4
5,834,050 + -1.1
5,834,051 - -0.5
5,834,051 - -1.0
5,834,823 + -0.7
5,834,823 + -0.9
5,834,823 + -0.3
5,834,823 + -0.5
5,834,823 + -0.0
5,834,824 - +0.4
5,834,824 - +1.0
5,834,824 - +0.4
5,834,824 - +0.2
5,834,824 - -0.1
5,835,024 + PS417_27020 0.25 -0.0
5,835,096 + PS417_27020 0.33 -0.9
5,835,138 + PS417_27020 0.37 +0.1
5,835,139 - PS417_27020 0.37 -0.8
5,835,139 - PS417_27020 0.37 +0.2
5,835,195 + PS417_27020 0.43 +1.1
5,835,336 + PS417_27020 0.59 +0.3
5,835,336 + PS417_27020 0.59 +0.4
5,835,337 - PS417_27020 0.59 +0.0
5,835,395 - PS417_27020 0.65 +0.5
5,835,448 + PS417_27020 0.71 +0.4
5,835,483 + PS417_27020 0.75 -2.1
5,835,483 + PS417_27020 0.75 -0.1
5,835,483 + PS417_27020 0.75 +0.8
5,835,484 - PS417_27020 0.75 -0.1
5,835,522 - PS417_27020 0.79 -0.1
5,835,746 + -0.1
5,835,747 - -0.3

Or see this region's nucleotide sequence