Strain Fitness in Pseudomonas simiae WCS417 around PS417_26895

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26890 and PS417_26895 are separated by 177 nucleotidesPS417_26895 and PS417_26900 are separated by 241 nucleotides PS417_26890: PS417_26890 - dihydroxy-acid dehydratase, at 5,805,944 to 5,807,785 _26890 PS417_26895: PS417_26895 - phosphorylcholine phosphatase, at 5,807,963 to 5,809,021 _26895 PS417_26900: PS417_26900 - L-cystine transporter tcyP, at 5,809,263 to 5,810,654 _26900 Position (kb) 5807 5808 5809 5810Strain fitness (log2 ratio) -2 -1 0 1 2at 5807.183 kb on + strand, within PS417_26890at 5807.578 kb on - strand, within PS417_26890at 5807.717 kb on + strandat 5807.718 kb on - strandat 5807.784 kb on - strandat 5807.784 kb on - strandat 5807.784 kb on - strandat 5807.840 kb on + strandat 5807.841 kb on - strandat 5807.913 kb on + strandat 5807.913 kb on + strandat 5807.914 kb on - strandat 5808.078 kb on + strand, within PS417_26895at 5808.078 kb on + strand, within PS417_26895at 5808.079 kb on - strand, within PS417_26895at 5808.079 kb on - strand, within PS417_26895at 5808.079 kb on - strand, within PS417_26895at 5808.079 kb on - strand, within PS417_26895at 5808.079 kb on - strand, within PS417_26895at 5808.147 kb on + strand, within PS417_26895at 5808.176 kb on + strand, within PS417_26895at 5808.176 kb on + strand, within PS417_26895at 5808.176 kb on + strand, within PS417_26895at 5808.176 kb on + strand, within PS417_26895at 5808.177 kb on - strand, within PS417_26895at 5808.177 kb on - strand, within PS417_26895at 5808.207 kb on + strand, within PS417_26895at 5808.207 kb on + strand, within PS417_26895at 5808.207 kb on + strand, within PS417_26895at 5808.208 kb on - strand, within PS417_26895at 5808.208 kb on - strand, within PS417_26895at 5808.262 kb on - strand, within PS417_26895at 5808.262 kb on - strand, within PS417_26895at 5808.402 kb on + strand, within PS417_26895at 5808.461 kb on + strand, within PS417_26895at 5808.461 kb on + strand, within PS417_26895at 5808.461 kb on + strand, within PS417_26895at 5808.461 kb on + strand, within PS417_26895at 5808.461 kb on + strand, within PS417_26895at 5808.462 kb on - strand, within PS417_26895at 5808.462 kb on - strand, within PS417_26895at 5808.462 kb on - strand, within PS417_26895at 5808.462 kb on - strand, within PS417_26895at 5808.465 kb on + strand, within PS417_26895at 5808.465 kb on + strand, within PS417_26895at 5808.465 kb on + strand, within PS417_26895at 5808.465 kb on + strand, within PS417_26895at 5808.465 kb on + strand, within PS417_26895at 5808.466 kb on - strand, within PS417_26895at 5808.466 kb on - strand, within PS417_26895at 5808.466 kb on - strand, within PS417_26895at 5808.466 kb on - strand, within PS417_26895at 5808.706 kb on - strand, within PS417_26895at 5808.706 kb on - strand, within PS417_26895at 5808.708 kb on + strand, within PS417_26895at 5808.754 kb on + strandat 5808.754 kb on + strand, within PS417_26895at 5808.810 kb on + strand, within PS417_26895at 5808.810 kb on + strand, within PS417_26895at 5808.811 kb on - strand, within PS417_26895at 5808.811 kb on - strand, within PS417_26895at 5808.811 kb on - strand, within PS417_26895at 5808.877 kb on + strand, within PS417_26895at 5808.878 kb on - strand, within PS417_26895at 5809.187 kb on + strandat 5809.288 kb on + strandat 5809.289 kb on - strandat 5809.289 kb on - strandat 5809.289 kb on - strandat 5809.289 kb on - strandat 5809.363 kb on + strandat 5809.363 kb on + strandat 5809.363 kb on + strandat 5809.364 kb on - strandat 5809.375 kb on + strandat 5809.476 kb on + strand, within PS417_26900at 5809.477 kb on - strand, within PS417_26900at 5809.514 kb on - strand, within PS417_26900at 5810.005 kb on + strand, within PS417_26900

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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5,807,183 + PS417_26890 0.67 +0.2
5,807,578 - PS417_26890 0.89 -1.1
5,807,717 + +0.2
5,807,718 - -0.4
5,807,784 - +0.4
5,807,784 - +0.6
5,807,784 - -0.4
5,807,840 + -0.2
5,807,841 - +0.5
5,807,913 + +0.2
5,807,913 + +0.4
5,807,914 - +0.5
5,808,078 + PS417_26895 0.11 -0.0
5,808,078 + PS417_26895 0.11 +0.4
5,808,079 - PS417_26895 0.11 -0.9
5,808,079 - PS417_26895 0.11 -0.3
5,808,079 - PS417_26895 0.11 +0.7
5,808,079 - PS417_26895 0.11 -0.9
5,808,079 - PS417_26895 0.11 -1.2
5,808,147 + PS417_26895 0.17 -0.1
5,808,176 + PS417_26895 0.20 +0.4
5,808,176 + PS417_26895 0.20 -0.4
5,808,176 + PS417_26895 0.20 +0.4
5,808,176 + PS417_26895 0.20 +0.1
5,808,177 - PS417_26895 0.20 -0.3
5,808,177 - PS417_26895 0.20 +0.0
5,808,207 + PS417_26895 0.23 -0.0
5,808,207 + PS417_26895 0.23 -0.5
5,808,207 + PS417_26895 0.23 -0.2
5,808,208 - PS417_26895 0.23 -0.0
5,808,208 - PS417_26895 0.23 -0.3
5,808,262 - PS417_26895 0.28 +0.1
5,808,262 - PS417_26895 0.28 -0.9
5,808,402 + PS417_26895 0.41 -0.2
5,808,461 + PS417_26895 0.47 -1.8
5,808,461 + PS417_26895 0.47 +0.9
5,808,461 + PS417_26895 0.47 +0.4
5,808,461 + PS417_26895 0.47 -1.0
5,808,461 + PS417_26895 0.47 -0.4
5,808,462 - PS417_26895 0.47 -0.1
5,808,462 - PS417_26895 0.47 -0.6
5,808,462 - PS417_26895 0.47 -0.3
5,808,462 - PS417_26895 0.47 +0.8
5,808,465 + PS417_26895 0.47 -0.4
5,808,465 + PS417_26895 0.47 -0.2
5,808,465 + PS417_26895 0.47 -0.5
5,808,465 + PS417_26895 0.47 -1.8
5,808,465 + PS417_26895 0.47 +0.1
5,808,466 - PS417_26895 0.47 -0.3
5,808,466 - PS417_26895 0.47 +0.3
5,808,466 - PS417_26895 0.47 -0.5
5,808,466 - PS417_26895 0.47 -0.3
5,808,706 - PS417_26895 0.70 +0.7
5,808,706 - PS417_26895 0.70 -0.2
5,808,708 + PS417_26895 0.70 -0.3
5,808,754 + +1.8
5,808,754 + PS417_26895 0.75 +1.4
5,808,810 + PS417_26895 0.80 -2.0
5,808,810 + PS417_26895 0.80 -0.3
5,808,811 - PS417_26895 0.80 -0.1
5,808,811 - PS417_26895 0.80 +0.5
5,808,811 - PS417_26895 0.80 +0.2
5,808,877 + PS417_26895 0.86 -1.8
5,808,878 - PS417_26895 0.86 -0.5
5,809,187 + +1.1
5,809,288 + +0.6
5,809,289 - -0.2
5,809,289 - +1.4
5,809,289 - -1.0
5,809,289 - -0.0
5,809,363 + +0.5
5,809,363 + +1.1
5,809,363 + +0.2
5,809,364 - +0.2
5,809,375 + -0.2
5,809,476 + PS417_26900 0.15 +0.7
5,809,477 - PS417_26900 0.15 +0.2
5,809,514 - PS417_26900 0.18 -0.3
5,810,005 + PS417_26900 0.53 -0.7

Or see this region's nucleotide sequence