Strain Fitness in Pseudomonas simiae WCS417 around PS417_26680

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26675 and PS417_26680 are separated by 77 nucleotidesPS417_26680 and PS417_26685 are separated by 67 nucleotidesPS417_26685 and PS417_26690 overlap by 1 nucleotides PS417_26675: PS417_26675 - glutathione synthetase, at 5,767,215 to 5,768,168 _26675 PS417_26680: PS417_26680 - energy transducer TonB, at 5,768,246 to 5,769,151 _26680 PS417_26685: PS417_26685 - hypothetical protein, at 5,769,219 to 5,769,788 _26685 PS417_26690: PS417_26690 - Holliday junction resolvase, at 5,769,788 to 5,770,225 _26690 Position (kb) 5768 5769 5770Strain fitness (log2 ratio) -1 0 1at 5768.169 kb on + strandat 5768.171 kb on + strandat 5768.171 kb on + strandat 5768.171 kb on + strandat 5768.171 kb on + strandat 5768.171 kb on + strandat 5768.172 kb on - strandat 5768.172 kb on - strandat 5768.172 kb on - strandat 5768.172 kb on - strandat 5769.309 kb on + strand, within PS417_26685at 5769.444 kb on + strand, within PS417_26685at 5769.580 kb on + strand, within PS417_26685

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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5,768,169 + -0.4
5,768,171 + -0.7
5,768,171 + -0.5
5,768,171 + -0.1
5,768,171 + +0.2
5,768,171 + +0.6
5,768,172 - -0.0
5,768,172 - +1.4
5,768,172 - -0.2
5,768,172 - +0.7
5,769,309 + PS417_26685 0.16 -0.2
5,769,444 + PS417_26685 0.39 +1.6
5,769,580 + PS417_26685 0.63 +1.0

Or see this region's nucleotide sequence