Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24565 and PS417_24570 are separated by 398 nucleotides PS417_24570 and PS417_24575 are separated by 202 nucleotides PS417_24575 and PS417_24580 overlap by 6 nucleotides
PS417_24565: PS417_24565 - hypothetical protein, at 5,330,150 to 5,331,196
_24565
PS417_24570: PS417_24570 - AsnC family transcriptional regulator, at 5,331,595 to 5,332,074
_24570
PS417_24575: PS417_24575 - hypothetical protein, at 5,332,277 to 5,332,486
_24575
PS417_24580: PS417_24580 - pseudouridine synthase, at 5,332,481 to 5,333,116
_24580
Position (kb)
5331
5332
5333 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5330.595 kb on + strand, within PS417_24565 at 5330.596 kb on - strand, within PS417_24565 at 5330.596 kb on - strand, within PS417_24565 at 5330.799 kb on + strand, within PS417_24565 at 5330.800 kb on - strand, within PS417_24565 at 5330.902 kb on + strand, within PS417_24565 at 5330.903 kb on - strand, within PS417_24565 at 5331.167 kb on + strand at 5331.167 kb on + strand at 5331.200 kb on - strand at 5331.475 kb on + strand at 5331.481 kb on + strand at 5331.739 kb on + strand, within PS417_24570 at 5331.739 kb on + strand, within PS417_24570 at 5331.739 kb on + strand, within PS417_24570 at 5331.739 kb on + strand, within PS417_24570 at 5331.740 kb on - strand, within PS417_24570 at 5331.740 kb on - strand, within PS417_24570 at 5331.800 kb on - strand, within PS417_24570 at 5332.089 kb on + strand at 5332.089 kb on + strand at 5332.089 kb on + strand at 5332.090 kb on - strand at 5332.090 kb on - strand at 5332.090 kb on - strand at 5332.143 kb on + strand at 5332.143 kb on + strand at 5332.144 kb on - strand at 5332.144 kb on - strand at 5332.144 kb on - strand at 5332.144 kb on - strand at 5332.235 kb on + strand at 5332.237 kb on + strand at 5332.349 kb on - strand, within PS417_24575 at 5332.483 kb on - strand at 5332.483 kb on - strand at 5332.484 kb on + strand at 5332.485 kb on - strand at 5332.485 kb on - strand at 5332.485 kb on - strand at 5332.601 kb on + strand, within PS417_24580 at 5332.613 kb on - strand, within PS417_24580 at 5332.644 kb on + strand, within PS417_24580 at 5332.653 kb on - strand, within PS417_24580 at 5333.002 kb on + strand, within PS417_24580
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 5,330,595 + PS417_24565 0.43 -2.0 5,330,596 - PS417_24565 0.43 -0.4 5,330,596 - PS417_24565 0.43 -0.2 5,330,799 + PS417_24565 0.62 -0.4 5,330,800 - PS417_24565 0.62 -0.7 5,330,902 + PS417_24565 0.72 -0.1 5,330,903 - PS417_24565 0.72 -0.1 5,331,167 + -0.7 5,331,167 + +0.2 5,331,200 - -0.5 5,331,475 + +2.5 5,331,481 + -0.7 5,331,739 + PS417_24570 0.30 -1.3 5,331,739 + PS417_24570 0.30 -0.5 5,331,739 + PS417_24570 0.30 -1.1 5,331,739 + PS417_24570 0.30 -1.8 5,331,740 - PS417_24570 0.30 -0.2 5,331,740 - PS417_24570 0.30 -2.1 5,331,800 - PS417_24570 0.43 -1.8 5,332,089 + +0.7 5,332,089 + -0.1 5,332,089 + +0.4 5,332,090 - -0.4 5,332,090 - +0.1 5,332,090 - +0.0 5,332,143 + -0.6 5,332,143 + -0.3 5,332,144 - -0.4 5,332,144 - +0.8 5,332,144 - -0.2 5,332,144 - -1.8 5,332,235 + -1.5 5,332,237 + +0.7 5,332,349 - PS417_24575 0.34 -0.6 5,332,483 - +0.7 5,332,483 - +0.1 5,332,484 + -0.2 5,332,485 - -0.9 5,332,485 - +0.0 5,332,485 - +0.4 5,332,601 + PS417_24580 0.19 -0.7 5,332,613 - PS417_24580 0.21 -1.3 5,332,644 + PS417_24580 0.26 +0.7 5,332,653 - PS417_24580 0.27 -0.4 5,333,002 + PS417_24580 0.82 -0.5
Or see this region's nucleotide sequence