Strain Fitness in Pseudomonas simiae WCS417 around PS417_24570

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24565 and PS417_24570 are separated by 398 nucleotidesPS417_24570 and PS417_24575 are separated by 202 nucleotidesPS417_24575 and PS417_24580 overlap by 6 nucleotides PS417_24565: PS417_24565 - hypothetical protein, at 5,330,150 to 5,331,196 _24565 PS417_24570: PS417_24570 - AsnC family transcriptional regulator, at 5,331,595 to 5,332,074 _24570 PS417_24575: PS417_24575 - hypothetical protein, at 5,332,277 to 5,332,486 _24575 PS417_24580: PS417_24580 - pseudouridine synthase, at 5,332,481 to 5,333,116 _24580 Position (kb) 5331 5332 5333Strain fitness (log2 ratio) -2 -1 0 1 2at 5330.595 kb on + strand, within PS417_24565at 5330.596 kb on - strand, within PS417_24565at 5330.596 kb on - strand, within PS417_24565at 5330.799 kb on + strand, within PS417_24565at 5330.800 kb on - strand, within PS417_24565at 5330.902 kb on + strand, within PS417_24565at 5330.903 kb on - strand, within PS417_24565at 5331.167 kb on + strandat 5331.167 kb on + strandat 5331.200 kb on - strandat 5331.475 kb on + strandat 5331.481 kb on + strandat 5331.739 kb on + strand, within PS417_24570at 5331.739 kb on + strand, within PS417_24570at 5331.739 kb on + strand, within PS417_24570at 5331.739 kb on + strand, within PS417_24570at 5331.740 kb on - strand, within PS417_24570at 5331.740 kb on - strand, within PS417_24570at 5331.800 kb on - strand, within PS417_24570at 5332.089 kb on + strandat 5332.089 kb on + strandat 5332.089 kb on + strandat 5332.090 kb on - strandat 5332.090 kb on - strandat 5332.090 kb on - strandat 5332.143 kb on + strandat 5332.143 kb on + strandat 5332.144 kb on - strandat 5332.144 kb on - strandat 5332.144 kb on - strandat 5332.144 kb on - strandat 5332.235 kb on + strandat 5332.237 kb on + strandat 5332.349 kb on - strand, within PS417_24575at 5332.483 kb on - strandat 5332.483 kb on - strandat 5332.484 kb on + strandat 5332.485 kb on - strandat 5332.485 kb on - strandat 5332.485 kb on - strandat 5332.601 kb on + strand, within PS417_24580at 5332.613 kb on - strand, within PS417_24580at 5332.644 kb on + strand, within PS417_24580at 5332.653 kb on - strand, within PS417_24580at 5333.002 kb on + strand, within PS417_24580

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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5,330,595 + PS417_24565 0.43 -2.0
5,330,596 - PS417_24565 0.43 -0.4
5,330,596 - PS417_24565 0.43 -0.2
5,330,799 + PS417_24565 0.62 -0.4
5,330,800 - PS417_24565 0.62 -0.7
5,330,902 + PS417_24565 0.72 -0.1
5,330,903 - PS417_24565 0.72 -0.1
5,331,167 + -0.7
5,331,167 + +0.2
5,331,200 - -0.5
5,331,475 + +2.5
5,331,481 + -0.7
5,331,739 + PS417_24570 0.30 -1.3
5,331,739 + PS417_24570 0.30 -0.5
5,331,739 + PS417_24570 0.30 -1.1
5,331,739 + PS417_24570 0.30 -1.8
5,331,740 - PS417_24570 0.30 -0.2
5,331,740 - PS417_24570 0.30 -2.1
5,331,800 - PS417_24570 0.43 -1.8
5,332,089 + +0.7
5,332,089 + -0.1
5,332,089 + +0.4
5,332,090 - -0.4
5,332,090 - +0.1
5,332,090 - +0.0
5,332,143 + -0.6
5,332,143 + -0.3
5,332,144 - -0.4
5,332,144 - +0.8
5,332,144 - -0.2
5,332,144 - -1.8
5,332,235 + -1.5
5,332,237 + +0.7
5,332,349 - PS417_24575 0.34 -0.6
5,332,483 - +0.7
5,332,483 - +0.1
5,332,484 + -0.2
5,332,485 - -0.9
5,332,485 - +0.0
5,332,485 - +0.4
5,332,601 + PS417_24580 0.19 -0.7
5,332,613 - PS417_24580 0.21 -1.3
5,332,644 + PS417_24580 0.26 +0.7
5,332,653 - PS417_24580 0.27 -0.4
5,333,002 + PS417_24580 0.82 -0.5

Or see this region's nucleotide sequence