Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02345 and PS417_02350 are separated by 120 nucleotides PS417_02350 and PS417_02355 are separated by 462 nucleotides
PS417_02345: PS417_02345 - 3-deoxy-D-manno-octulosonic acid transferase, at 535,078 to 536,355
_02345
PS417_02350: PS417_02350 - channel protein TolC, at 536,476 to 537,915
_02350
PS417_02355: PS417_02355 - thiamine biosynthesis protein ThiC, at 538,378 to 540,270
_02355
Position (kb) 536
537
538 Strain fitness (log2 ratio) -1
0
1
2
3 at 536.401 kb on + strand at 536.401 kb on + strand at 536.402 kb on - strand at 536.465 kb on - strand at 536.467 kb on - strand at 536.467 kb on - strand at 536.467 kb on - strand at 536.477 kb on + strand at 536.478 kb on - strand at 536.480 kb on + strand at 536.555 kb on + strand at 536.645 kb on + strand, within PS417_02350 at 536.667 kb on - strand, within PS417_02350 at 536.667 kb on - strand, within PS417_02350 at 536.758 kb on + strand, within PS417_02350 at 536.759 kb on - strand, within PS417_02350 at 536.907 kb on - strand, within PS417_02350 at 536.907 kb on - strand, within PS417_02350 at 537.059 kb on + strand, within PS417_02350 at 537.060 kb on - strand, within PS417_02350 at 537.137 kb on + strand, within PS417_02350 at 537.137 kb on + strand, within PS417_02350 at 537.137 kb on + strand, within PS417_02350 at 537.255 kb on - strand, within PS417_02350 at 537.342 kb on - strand, within PS417_02350 at 537.810 kb on - strand at 537.966 kb on - strand at 538.012 kb on + strand at 538.012 kb on + strand at 538.013 kb on - strand at 538.102 kb on + strand at 538.102 kb on + strand at 538.103 kb on - strand at 538.349 kb on + strand at 538.579 kb on + strand at 538.597 kb on + strand, within PS417_02355 at 538.598 kb on - strand, within PS417_02355 at 538.667 kb on + strand, within PS417_02355 at 538.668 kb on - strand, within PS417_02355 at 538.813 kb on + strand, within PS417_02355 at 538.814 kb on - strand, within PS417_02355 at 538.814 kb on - strand, within PS417_02355 at 538.814 kb on - strand, within PS417_02355 at 538.850 kb on - strand, within PS417_02355
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 536,401 + +0.1 536,401 + +1.0 536,402 - -0.9 536,465 - +0.6 536,467 - -0.4 536,467 - -0.3 536,467 - +1.1 536,477 + +0.9 536,478 - -0.8 536,480 + +0.2 536,555 + -0.2 536,645 + PS417_02350 0.12 -0.8 536,667 - PS417_02350 0.13 -0.2 536,667 - PS417_02350 0.13 -1.4 536,758 + PS417_02350 0.20 -0.9 536,759 - PS417_02350 0.20 +0.9 536,907 - PS417_02350 0.30 +1.5 536,907 - PS417_02350 0.30 -0.9 537,059 + PS417_02350 0.40 +0.1 537,060 - PS417_02350 0.41 -0.5 537,137 + PS417_02350 0.46 +0.1 537,137 + PS417_02350 0.46 -1.5 537,137 + PS417_02350 0.46 +2.9 537,255 - PS417_02350 0.54 -1.0 537,342 - PS417_02350 0.60 -0.2 537,810 - +1.0 537,966 - -0.7 538,012 + -0.5 538,012 + -0.1 538,013 - -1.0 538,102 + -0.2 538,102 + -0.8 538,103 - +1.1 538,349 + -0.4 538,579 + +1.7 538,597 + PS417_02355 0.12 +0.4 538,598 - PS417_02355 0.12 -0.1 538,667 + PS417_02355 0.15 -0.9 538,668 - PS417_02355 0.15 -0.5 538,813 + PS417_02355 0.23 -0.0 538,814 - PS417_02355 0.23 -0.1 538,814 - PS417_02355 0.23 -0.4 538,814 - PS417_02355 0.23 -1.0 538,850 - PS417_02355 0.25 -0.0
Or see this region's nucleotide sequence