Strain Fitness in Pseudomonas simiae WCS417 around PS417_22700

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22695 and PS417_22700 are separated by 196 nucleotidesPS417_22700 and PS417_22705 are separated by 74 nucleotides PS417_22695: PS417_22695 - glyceraldehyde-3-phosphate dehydrogenase, at 4,915,330 to 4,916,331 _22695 PS417_22700: PS417_22700 - RNA polymerase subunit sigma-24, at 4,916,528 to 4,917,046 _22700 PS417_22705: PS417_22705 - glycerol-3-phosphate ABC transporter substrate-binding protein, at 4,917,121 to 4,918,089 _22705 Position (kb) 4916 4917 4918Strain fitness (log2 ratio) -3 -2 -1 0 1at 4915.665 kb on + strand, within PS417_22695at 4915.665 kb on + strand, within PS417_22695at 4915.666 kb on - strand, within PS417_22695at 4915.666 kb on - strand, within PS417_22695at 4915.733 kb on - strand, within PS417_22695at 4916.152 kb on + strand, within PS417_22695at 4916.155 kb on - strand, within PS417_22695at 4916.155 kb on - strand, within PS417_22695at 4916.263 kb on + strandat 4916.293 kb on - strandat 4916.293 kb on - strandat 4916.301 kb on + strandat 4916.329 kb on + strandat 4916.330 kb on - strandat 4916.643 kb on - strand, within PS417_22700at 4916.702 kb on + strand, within PS417_22700at 4917.008 kb on - strandat 4917.016 kb on - strandat 4917.016 kb on - strandat 4917.016 kb on - strandat 4917.016 kb on - strandat 4917.016 kb on - strandat 4917.092 kb on + strandat 4917.092 kb on + strandat 4917.326 kb on + strand, within PS417_22705at 4917.531 kb on - strand, within PS417_22705at 4917.531 kb on - strand, within PS417_22705at 4917.994 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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4,915,665 + PS417_22695 0.33 -0.4
4,915,665 + PS417_22695 0.33 +0.1
4,915,666 - PS417_22695 0.34 +0.9
4,915,666 - PS417_22695 0.34 +0.1
4,915,733 - PS417_22695 0.40 -0.9
4,916,152 + PS417_22695 0.82 -0.6
4,916,155 - PS417_22695 0.82 -1.3
4,916,155 - PS417_22695 0.82 -0.6
4,916,263 + +0.1
4,916,293 - -3.2
4,916,293 - -0.4
4,916,301 + -0.3
4,916,329 + -0.1
4,916,330 - +0.1
4,916,643 - PS417_22700 0.22 -1.6
4,916,702 + PS417_22700 0.34 -1.5
4,917,008 - -0.4
4,917,016 - +0.3
4,917,016 - -0.4
4,917,016 - -1.7
4,917,016 - -1.1
4,917,016 - -1.2
4,917,092 + +0.1
4,917,092 + -0.4
4,917,326 + PS417_22705 0.21 +0.6
4,917,531 - PS417_22705 0.42 +1.2
4,917,531 - PS417_22705 0.42 +0.5
4,917,994 + +0.5

Or see this region's nucleotide sequence