Strain Fitness in Pseudomonas simiae WCS417 around PS417_22685

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22675 and PS417_22680 overlap by 11 nucleotidesPS417_22680 and PS417_22685 are separated by 136 nucleotidesPS417_22685 and PS417_22690 overlap by 4 nucleotides PS417_22675: PS417_22675 - histidine kinase, at 4,909,999 to 4,911,468 _22675 PS417_22680: PS417_22680 - chemotaxis protein CheY, at 4,911,458 to 4,912,192 _22680 PS417_22685: PS417_22685 - Glucokinase (EC 2.7.1.2) (from data), at 4,912,329 to 4,913,285 _22685 PS417_22690: PS417_22690 - phosphogluconate dehydratase, at 4,913,282 to 4,915,108 _22690 Position (kb) 4912 4913 4914Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4911.751 kb on + strand, within PS417_22680at 4911.879 kb on + strand, within PS417_22680at 4911.879 kb on + strand, within PS417_22680at 4911.880 kb on - strand, within PS417_22680at 4911.880 kb on - strand, within PS417_22680at 4911.880 kb on - strand, within PS417_22680at 4912.122 kb on + strandat 4912.123 kb on - strandat 4912.123 kb on - strandat 4912.123 kb on - strandat 4912.123 kb on - strandat 4912.178 kb on - strandat 4912.222 kb on + strandat 4912.222 kb on + strandat 4912.222 kb on + strandat 4912.223 kb on - strandat 4912.223 kb on - strandat 4912.223 kb on - strandat 4912.320 kb on + strandat 4912.320 kb on + strandat 4912.331 kb on - strandat 4912.331 kb on - strandat 4912.417 kb on + strandat 4912.470 kb on - strand, within PS417_22685at 4912.510 kb on + strand, within PS417_22685at 4912.510 kb on + strand, within PS417_22685at 4912.510 kb on + strand, within PS417_22685at 4912.510 kb on + strand, within PS417_22685at 4912.511 kb on - strand, within PS417_22685at 4912.511 kb on - strand, within PS417_22685at 4912.588 kb on - strand, within PS417_22685at 4912.588 kb on - strand, within PS417_22685at 4912.688 kb on - strand, within PS417_22685at 4912.748 kb on + strand, within PS417_22685at 4912.750 kb on + strand, within PS417_22685at 4912.750 kb on + strand, within PS417_22685at 4912.750 kb on + strand, within PS417_22685at 4912.751 kb on - strand, within PS417_22685at 4913.152 kb on + strand, within PS417_22685at 4913.153 kb on - strand, within PS417_22685at 4913.309 kb on - strandat 4913.443 kb on + strandat 4913.575 kb on + strand, within PS417_22690at 4913.575 kb on + strand, within PS417_22690

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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4,911,751 + PS417_22680 0.40 +1.2
4,911,879 + PS417_22680 0.57 +0.5
4,911,879 + PS417_22680 0.57 -0.1
4,911,880 - PS417_22680 0.57 +0.7
4,911,880 - PS417_22680 0.57 -1.4
4,911,880 - PS417_22680 0.57 +0.4
4,912,122 + +0.1
4,912,123 - -0.7
4,912,123 - -0.8
4,912,123 - +2.0
4,912,123 - +0.7
4,912,178 - -0.0
4,912,222 + +0.3
4,912,222 + +0.0
4,912,222 + -0.5
4,912,223 - -0.8
4,912,223 - +0.4
4,912,223 - -0.2
4,912,320 + -0.8
4,912,320 + -0.2
4,912,331 - -0.6
4,912,331 - +0.1
4,912,417 + -1.3
4,912,470 - PS417_22685 0.15 -2.0
4,912,510 + PS417_22685 0.19 -1.6
4,912,510 + PS417_22685 0.19 -0.3
4,912,510 + PS417_22685 0.19 -0.1
4,912,510 + PS417_22685 0.19 -1.5
4,912,511 - PS417_22685 0.19 -2.7
4,912,511 - PS417_22685 0.19 -1.7
4,912,588 - PS417_22685 0.27 -1.0
4,912,588 - PS417_22685 0.27 -1.1
4,912,688 - PS417_22685 0.38 -3.2
4,912,748 + PS417_22685 0.44 -0.3
4,912,750 + PS417_22685 0.44 -1.1
4,912,750 + PS417_22685 0.44 -2.4
4,912,750 + PS417_22685 0.44 -0.8
4,912,751 - PS417_22685 0.44 -1.7
4,913,152 + PS417_22685 0.86 -2.0
4,913,153 - PS417_22685 0.86 -2.4
4,913,309 - -0.8
4,913,443 + -0.7
4,913,575 + PS417_22690 0.16 -1.1
4,913,575 + PS417_22690 0.16 -1.6

Or see this region's nucleotide sequence