Strain Fitness in Pseudomonas simiae WCS417 around PS417_21940

Experiment: Fraxetin 3 mM; solid stress

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21930 and PS417_21935 are separated by 88 nucleotidesPS417_21935 and PS417_21940 are separated by 11 nucleotidesPS417_21940 and PS417_21945 are separated by 204 nucleotides PS417_21930: PS417_21930 - membrane protein, at 4,758,864 to 4,759,328 _21930 PS417_21935: PS417_21935 - transcriptional regulator, at 4,759,417 to 4,760,271 _21935 PS417_21940: PS417_21940 - hypothetical protein, at 4,760,283 to 4,760,528 _21940 PS417_21945: PS417_21945 - RNA polymerase subunit sigma-24, at 4,760,733 to 4,761,956 _21945 Position (kb) 4760 4761Strain fitness (log2 ratio) -1 0 1at 4759.391 kb on - strandat 4759.554 kb on - strand, within PS417_21935at 4759.721 kb on - strand, within PS417_21935at 4759.721 kb on - strand, within PS417_21935at 4759.959 kb on - strand, within PS417_21935at 4760.117 kb on + strand, within PS417_21935at 4760.323 kb on + strandat 4760.394 kb on - strand, within PS417_21940at 4760.592 kb on + strandat 4760.722 kb on + strandat 4760.821 kb on + strandat 4760.894 kb on - strand, within PS417_21945at 4761.022 kb on - strand, within PS417_21945at 4761.022 kb on - strand, within PS417_21945at 4761.022 kb on - strand, within PS417_21945at 4761.028 kb on + strand, within PS417_21945at 4761.028 kb on + strand, within PS417_21945at 4761.409 kb on + strand, within PS417_21945at 4761.409 kb on + strand, within PS417_21945at 4761.409 kb on + strand, within PS417_21945at 4761.424 kb on - strand, within PS417_21945

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Per-strain Table

Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress
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4,759,391 - +0.4
4,759,554 - PS417_21935 0.16 -1.5
4,759,721 - PS417_21935 0.36 -0.2
4,759,721 - PS417_21935 0.36 +0.0
4,759,959 - PS417_21935 0.63 -0.3
4,760,117 + PS417_21935 0.82 +0.8
4,760,323 + +1.7
4,760,394 - PS417_21940 0.45 +0.2
4,760,592 + -0.6
4,760,722 + +0.3
4,760,821 + -0.1
4,760,894 - PS417_21945 0.13 -0.3
4,761,022 - PS417_21945 0.24 -1.3
4,761,022 - PS417_21945 0.24 +0.6
4,761,022 - PS417_21945 0.24 -0.1
4,761,028 + PS417_21945 0.24 +0.8
4,761,028 + PS417_21945 0.24 -1.6
4,761,409 + PS417_21945 0.55 -1.1
4,761,409 + PS417_21945 0.55 -0.3
4,761,409 + PS417_21945 0.55 -0.5
4,761,424 - PS417_21945 0.56 +0.6

Or see this region's nucleotide sequence