Experiment: Fraxetin 3 mM; solid stress
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16700 and PS417_16705 are separated by 59 nucleotides PS417_16705 and PS417_16710 are separated by 26 nucleotides PS417_16710 and PS417_16715 are separated by 18 nucleotides PS417_16715 and PS417_16720 overlap by 4 nucleotides PS417_16720 and PS417_16725 are separated by 129 nucleotides
PS417_16700: PS417_16700 - hypothetical protein, at 3,645,497 to 3,646,321
_16700
PS417_16705: PS417_16705 - hypothetical protein, at 3,646,381 to 3,646,653
_16705
PS417_16710: PS417_16710 - hydrolase, at 3,646,680 to 3,647,441
_16710
PS417_16715: PS417_16715 - DoxX family protein, at 3,647,460 to 3,647,867
_16715
PS417_16720: PS417_16720 - membrane protein, at 3,647,864 to 3,648,136
_16720
PS417_16725: PS417_16725 - hypothetical protein, at 3,648,266 to 3,648,466
_16725
Position (kb)
3646
3647
3648 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3645.787 kb on + strand, within PS417_16700 at 3645.839 kb on - strand, within PS417_16700 at 3645.880 kb on - strand, within PS417_16700 at 3645.880 kb on - strand, within PS417_16700 at 3645.973 kb on - strand, within PS417_16700 at 3646.174 kb on + strand, within PS417_16700 at 3646.175 kb on - strand, within PS417_16700 at 3646.387 kb on - strand at 3646.681 kb on + strand at 3646.681 kb on + strand at 3646.741 kb on + strand at 3646.741 kb on + strand at 3646.792 kb on + strand, within PS417_16710 at 3646.792 kb on + strand, within PS417_16710 at 3646.881 kb on + strand, within PS417_16710 at 3647.269 kb on + strand at 3647.269 kb on + strand, within PS417_16710 at 3647.435 kb on + strand at 3647.435 kb on + strand at 3647.435 kb on + strand at 3647.436 kb on - strand at 3647.436 kb on - strand at 3647.572 kb on + strand, within PS417_16715 at 3647.709 kb on + strand, within PS417_16715 at 3647.722 kb on + strand, within PS417_16715 at 3647.955 kb on + strand, within PS417_16720 at 3648.163 kb on + strand at 3648.275 kb on + strand at 3648.276 kb on - strand at 3648.312 kb on + strand, within PS417_16725 at 3648.364 kb on - strand at 3648.367 kb on + strand, within PS417_16725 at 3648.367 kb on + strand, within PS417_16725 at 3648.367 kb on + strand, within PS417_16725 at 3648.367 kb on + strand, within PS417_16725 at 3648.368 kb on - strand, within PS417_16725 at 3648.368 kb on - strand, within PS417_16725 at 3648.368 kb on - strand, within PS417_16725 at 3648.368 kb on - strand, within PS417_16725 at 3648.368 kb on - strand, within PS417_16725 at 3648.371 kb on + strand, within PS417_16725 at 3648.372 kb on - strand, within PS417_16725 at 3648.372 kb on - strand, within PS417_16725 at 3648.373 kb on + strand, within PS417_16725
Per-strain Table
Position Strand Gene LocusTag Fraction Fraxetin 3 mM; solid stress remove 3,645,787 + PS417_16700 0.35 -0.1 3,645,839 - PS417_16700 0.41 -0.3 3,645,880 - PS417_16700 0.46 -0.7 3,645,880 - PS417_16700 0.46 -0.4 3,645,973 - PS417_16700 0.58 +0.1 3,646,174 + PS417_16700 0.82 +0.8 3,646,175 - PS417_16700 0.82 +0.0 3,646,387 - -0.1 3,646,681 + -0.1 3,646,681 + -1.4 3,646,741 + -0.8 3,646,741 + -2.4 3,646,792 + PS417_16710 0.15 -0.2 3,646,792 + PS417_16710 0.15 -2.1 3,646,881 + PS417_16710 0.26 -1.1 3,647,269 + -0.3 3,647,269 + PS417_16710 0.77 -1.5 3,647,435 + +0.2 3,647,435 + -0.1 3,647,435 + +0.1 3,647,436 - -0.1 3,647,436 - -0.4 3,647,572 + PS417_16715 0.27 -1.8 3,647,709 + PS417_16715 0.61 +0.5 3,647,722 + PS417_16715 0.64 +0.2 3,647,955 + PS417_16720 0.33 +0.3 3,648,163 + -0.1 3,648,275 + +0.1 3,648,276 - +0.1 3,648,312 + PS417_16725 0.23 +1.8 3,648,364 - +0.7 3,648,367 + PS417_16725 0.50 -0.5 3,648,367 + PS417_16725 0.50 +0.1 3,648,367 + PS417_16725 0.50 -0.4 3,648,367 + PS417_16725 0.50 +0.3 3,648,368 - PS417_16725 0.51 -0.1 3,648,368 - PS417_16725 0.51 +0.5 3,648,368 - PS417_16725 0.51 +0.8 3,648,368 - PS417_16725 0.51 +0.0 3,648,368 - PS417_16725 0.51 +0.4 3,648,371 + PS417_16725 0.52 +0.4 3,648,372 - PS417_16725 0.53 -1.3 3,648,372 - PS417_16725 0.53 +0.0 3,648,373 + PS417_16725 0.53 -0.3
Or see this region's nucleotide sequence